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JAL-2154 ENA specific Ensembl canonical db prefixes
[jalview.git]
/
src
/
jalview
/
util
/
DBRefUtils.java
diff --git
a/src/jalview/util/DBRefUtils.java
b/src/jalview/util/DBRefUtils.java
index
d5d0cf5
..
1965c20
100755
(executable)
--- a/
src/jalview/util/DBRefUtils.java
+++ b/
src/jalview/util/DBRefUtils.java
@@
-59,6
+59,11
@@
public class DBRefUtils
canonicalSourceNameLookup.put("pdb", DBRefSource.PDB);
canonicalSourceNameLookup.put("ensembl", DBRefSource.ENSEMBL);
canonicalSourceNameLookup.put("pdb", DBRefSource.PDB);
canonicalSourceNameLookup.put("ensembl", DBRefSource.ENSEMBL);
+ // Ensembl Gn and Tr are for Ensembl genomic and transcript IDs as served
+ // from ENA.
+ canonicalSourceNameLookup.put("ensembl-tr", DBRefSource.ENSEMBL);
+ canonicalSourceNameLookup.put("ensembl-gn", DBRefSource.ENSEMBL);
+
dasCoordinateSystemsLookup.put("pdbresnum", DBRefSource.PDB);
dasCoordinateSystemsLookup.put("uniprot", DBRefSource.UNIPROT);
dasCoordinateSystemsLookup.put("pdbresnum", DBRefSource.PDB);
dasCoordinateSystemsLookup.put("uniprot", DBRefSource.UNIPROT);