- AverageDistanceEngine clusterer = new AverageDistanceEngine(null, null, this);
- double height = clusterer.findHeight(clusterer.getTopNode());
- newick = new jalview.io.NewickFile(clusterer.getTopNode(),false,true).print();
- treeType = "UPGMA";
- Console.trace("Newick string\n"+newick);
-
- List<BinaryNode> nodegroups;
- if (abs ? height > thresh : 0 < thresh && thresh < 1)