- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
import jalview.datamodel.AlignmentView;
import jalview.gui.AlignFrame;
import jalview.gui.Desktop;
import jalview.datamodel.AlignmentView;
import jalview.gui.AlignFrame;
import jalview.gui.Desktop;
public MsaWSClient(Jws2Instance sh, String altitle,
jalview.datamodel.AlignmentView msa, boolean submitGaps,
public MsaWSClient(Jws2Instance sh, String altitle,
jalview.datamodel.AlignmentView msa, boolean submitGaps,
AlignFrame _alignFrame)
{
this(sh, null, null, false, altitle, msa, submitGaps, preserveOrder,
AlignFrame _alignFrame)
{
this(sh, null, null, false, altitle, msa, submitGaps, preserveOrder,
public MsaWSClient(Jws2Instance sh, WsParamSetI preset, String altitle,
jalview.datamodel.AlignmentView msa, boolean submitGaps,
public MsaWSClient(Jws2Instance sh, WsParamSetI preset, String altitle,
jalview.datamodel.AlignmentView msa, boolean submitGaps,
AlignFrame _alignFrame)
{
this(sh, preset, null, false, altitle, msa, submitGaps, preserveOrder,
AlignFrame _alignFrame)
{
this(sh, preset, null, false, altitle, msa, submitGaps, preserveOrder,
public MsaWSClient(Jws2Instance sh, WsParamSetI preset,
List<Argument> arguments, boolean editParams, String altitle,
jalview.datamodel.AlignmentView msa, boolean submitGaps,
public MsaWSClient(Jws2Instance sh, WsParamSetI preset,
List<Argument> arguments, boolean editParams, String altitle,
jalview.datamodel.AlignmentView msa, boolean submitGaps,
// redundant at mo - but may change
JOptionPane.showMessageDialog(Desktop.desktop, MessageManager
.formatMessage("label.service_called_is_not_msa_service",
// redundant at mo - but may change
JOptionPane.showMessageDialog(Desktop.desktop, MessageManager
.formatMessage("label.service_called_is_not_msa_service",
.getString("label.internal_jalview_error"),
JOptionPane.WARNING_MESSAGE);
.getString("label.internal_jalview_error"),
JOptionPane.WARNING_MESSAGE);
if ((wsInfo = setWebService(sh, false)) == null)
{
JOptionPane.showMessageDialog(Desktop.desktop, MessageManager
if ((wsInfo = setWebService(sh, false)) == null)
{
JOptionPane.showMessageDialog(Desktop.desktop, MessageManager
- .formatMessage("label.msa_service_is_unknown", new String[]
- { sh.serviceType }), MessageManager
+ .formatMessage("label.msa_service_is_unknown",
+ new String[] { sh.serviceType }), MessageManager
.getString("label.internal_jalview_error"),
JOptionPane.WARNING_MESSAGE);
.getString("label.internal_jalview_error"),
JOptionPane.WARNING_MESSAGE);
startMsaWSClient(altitle, msa, submitGaps, preserveOrder, seqdataset);
startMsaWSClient(altitle, msa, submitGaps, preserveOrder, seqdataset);
public void attachWSMenuEntry(JMenu rmsawsmenu,
final Jws2Instance service, final AlignFrame alignFrame)
{
public void attachWSMenuEntry(JMenu rmsawsmenu,
final Jws2Instance service, final AlignFrame alignFrame)
{
msawsmenu.setToolTipText(MessageManager
.getString("label.align_sequences_to_existing_alignment"));
rmsawsmenu.add(msawsmenu);
msawsmenu.setToolTipText(MessageManager
.getString("label.align_sequences_to_existing_alignment"));
rmsawsmenu.add(msawsmenu);
- "label.calcname_with_default_settings", new String[]
- { calcName }));
- method.setToolTipText(MessageManager.formatMessage(
- "label.action_with_default_settings", new String[]
- { action }));
+ "label.calcname_with_default_settings",
+ new String[] { calcName }));
+ method.setToolTipText(MessageManager
+ .formatMessage("label.action_with_default_settings",
+ new String[] { action }));
public void actionPerformed(ActionEvent e)
{
AlignmentView msa = alignFrame.gatherSequencesForAlignment();
if (msa != null)
{
public void actionPerformed(ActionEvent e)
{
AlignmentView msa = alignFrame.gatherSequencesForAlignment();
if (msa != null)
{
- new MsaWSClient(service, alignFrame.getTitle(), msa, withGaps,
- true, alignFrame.getViewport().getAlignment()
- .getDataset(), alignFrame);
+ new MsaWSClient(service, alignFrame.getTitle(), msa, withGaps,
+ true, alignFrame.getViewport().getAlignment()
+ .getDataset(), alignFrame);
public void actionPerformed(ActionEvent e)
{
AlignmentView msa = alignFrame.gatherSequencesForAlignment();
if (msa != null)
{
new MsaWSClient(service, null, null, true, alignFrame
public void actionPerformed(ActionEvent e)
{
AlignmentView msa = alignFrame.gatherSequencesForAlignment();
if (msa != null)
{
new MsaWSClient(service, null, null, true, alignFrame
- .getTitle(), msa, withGaps, true, alignFrame
- .getViewport().getAlignment().getDataset(), alignFrame);
+ .getTitle(), msa, withGaps, true, alignFrame
+ .getViewport().getAlignment().getDataset(),
+ alignFrame);
List<WsParamSetI> presets = service.getParamStore().getPresets();
if (presets != null && presets.size() > 0)
{
List<WsParamSetI> presets = service.getParamStore().getPresets();
if (presets != null && presets.size() > 0)
{
- JMenu presetlist = new JMenu(MessageManager.formatMessage(
- "label.run_with_preset_params", new String[]
- { calcName }));
+ JMenu presetlist = new JMenu(
+ MessageManager.formatMessage(
+ "label.run_with_preset_params",
+ new String[] { calcName }));
- methodR.setToolTipText(JvSwingUtils.wrapTooltip(
- true,
- "<p><strong>"
- + (preset.isModifiable() ? MessageManager
- .getString("label.user_preset")
- : MessageManager
- .getString("label.service_preset"))
- + "</strong><br/>" + preset.getDescription()
- + "</p>"));
+ String tooltip = JvSwingUtils
+ .wrapTooltip(
+ true,
+ "<strong>"
+ + (preset.isModifiable() ? MessageManager
+ .getString("label.user_preset")
+ : MessageManager
+ .getString("label.service_preset"))
+ + "</strong><br/>"
+ + preset.getDescription());
+ methodR.setToolTipText(tooltip);
- alignFrame.getTitle(),
- msa, false, true, alignFrame.getViewport()
- .getAlignment().getDataset(), alignFrame);
+ alignFrame.getTitle(), msa, false, true,
+ alignFrame.getViewport().getAlignment()
+ .getDataset(), alignFrame);