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reorganising vamsasArchive (write to temp file, rather than write to original filename)
[vamsas.git]
/
src
/
org
/
vamsas
/
client
/
simpleclient
/
VamsasArchiveReader.java
diff --git
a/src/org/vamsas/client/simpleclient/VamsasArchiveReader.java
b/src/org/vamsas/client/simpleclient/VamsasArchiveReader.java
index
e04e7c9
..
f56ed40
100644
(file)
--- a/
src/org/vamsas/client/simpleclient/VamsasArchiveReader.java
+++ b/
src/org/vamsas/client/simpleclient/VamsasArchiveReader.java
@@
-8,6
+8,9
@@
import java.util.jar.JarEntry;
import java.util.jar.JarFile;
import java.util.jar.JarInputStream;
import java.util.jar.JarOutputStream;
import java.util.jar.JarFile;
import java.util.jar.JarInputStream;
import java.util.jar.JarOutputStream;
+
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
/**
* Basic methods for accessing an existing Vamsas Archive,
* and Jar entry names for creating new vamsas archives.
/**
* Basic methods for accessing an existing Vamsas Archive,
* and Jar entry names for creating new vamsas archives.
@@
-16,6
+19,7
@@
import java.util.jar.JarOutputStream;
*
*/
public class VamsasArchiveReader {
*
*/
public class VamsasArchiveReader {
+ private static Log log = LogFactory.getLog(VamsasArchiveReader.class);
JarFile jfile;
public VamsasArchiveReader(File vamsasfile) {
jfile=null;
JarFile jfile;
public VamsasArchiveReader(File vamsasfile) {
jfile=null;
@@
-118,6
+122,7
@@
public class VamsasArchiveReader {
*/
public InputStream getVamsasXmlStream() {
*/
public InputStream getVamsasXmlStream() {
+ // log.warn("Deprecated call");
JarEntry xmle=getVamsasXmlEntry();
InputStream vdoc;
if (xmle==null)
JarEntry xmle=getVamsasXmlEntry();
InputStream vdoc;
if (xmle==null)