-import java.io.*;\r
-import java.util.*;\r
-\r
-public class help2Website\r
-{\r
-\r
- public static void main(String [] args)\r
- {\r
- try{\r
- Hashtable targets = new Hashtable();\r
-\r
- File toc = new File("helpTOC.xml");\r
- File jhm = new File("help.jhm");\r
-\r
- BufferedReader in = new BufferedReader(new FileReader(jhm));\r
-\r
- PrintWriter out = new PrintWriter(new FileWriter("helpTOC.html"));\r
- out.println("<html><head></head><title>Jalview - Help </title></head>\n"\r
- +"<body bgcolor=#F1F1F1>\n"\r
- +"<p><center><strong>Contents</strong></center></p>\n");\r
-\r
- String line;\r
-\r
- StringTokenizer st;\r
- StringBuffer indent = new StringBuffer();\r
- String target, url, text;\r
- while( (line = in.readLine()) != null)\r
- {\r
- if(line.indexOf("target")==-1)\r
- continue;\r
-\r
- st = new StringTokenizer(line, "\"");\r
- st.nextToken(); //<mapID target="\r
-\r
- target = st.nextToken();\r
- st.nextToken(); //" url="\r
-\r
- url = st.nextToken();\r
- targets.put(target, url);\r
- }\r
-\r
- in = new BufferedReader(new FileReader(toc));\r
- while( (line = in.readLine()) != null)\r
- {\r
- if(line.indexOf("</tocitem>")!=-1)\r
- indent.setLength(indent.length()-18);\r
-\r
- if(line.indexOf("<tocitem")==-1)\r
- continue;\r
-\r
- st = new StringTokenizer(line, "\"");\r
- st.nextToken();\r
-\r
- text = st.nextToken();\r
- st.nextToken();\r
-\r
- target = st.nextToken();\r
-\r
- if(targets.get(target)!=null)\r
- out.println("<br>"+indent+"<a href=\""\r
- + targets.get(target)\r
- +"\" target=bodyframe>"\r
- +text\r
- +"</a>");\r
- else\r
- out.println("<br>"+indent+text);\r
-\r
-\r
- if(line.indexOf("/>")==-1)\r
- indent.append(" ");\r
-\r
- }\r
-\r
- out.println("</body>\n</html>");\r
-\r
-\r
- out.close();\r
-\r
- }\r
-\r
- catch(Exception ex)\r
- {\r
- ex.printStackTrace();\r
-\r
- System.out.println("Usage: move to Help directory. help2Website will read"\r
- +"\nhelpTOC.xml and help.jhm producing output helpTOC.html");\r
- }\r
- }\r
-\r
-\r
-}
\ No newline at end of file
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+import java.io.*;
+import java.util.*;
+
+public class help2Website
+{
+
+ public static void main(String[] args)
+ {
+ String line = "";
+ try
+ {
+ Hashtable targets = new Hashtable();
+
+ File toc = new File("helpTOC.xml");
+ File jhm = new File("help.jhm");
+
+ BufferedReader in = new BufferedReader(new FileReader(jhm));
+
+ PrintWriter out = new PrintWriter(new FileWriter("helpTOC.html"));
+ out.println("<html><head><title>Jalview - Help </title></head>\n"
+ + "<body bgcolor=#F1F1F1>\n"
+ + "<p><center><strong>Contents</strong></center></p>\n");
+
+ StringTokenizer st;
+ StringBuffer indent = new StringBuffer();
+ String target, url, text;
+ while ((line = in.readLine()) != null)
+ {
+ if (line.indexOf("target") == -1)
+ continue;
+
+ st = new StringTokenizer(line, "\"");
+ st.nextToken(); // <mapID target="
+
+ target = st.nextToken();
+ st.nextToken(); // " url="
+
+ url = st.nextToken();
+ targets.put(target, url);
+ }
+
+ in = new BufferedReader(new FileReader(toc));
+ while ((line = in.readLine()) != null)
+ {
+ if (line.indexOf("</tocitem>") != -1)
+ indent.setLength(indent.length() - 18);
+
+ if (line.indexOf("<tocitem") == -1)
+ continue;
+
+ st = new StringTokenizer(line, "\"");
+ st.nextToken();
+
+ text = st.nextToken();
+ st.nextToken();
+
+ target = st.nextToken();
+
+ if (targets.get(target) != null)
+ {
+ out.println("<br>" + indent + "<a href=\"" + targets.get(target)
+ + "\" target=bodyframe>" + text + "</a>");
+ }
+ else
+ out.println("<br>" + indent + text);
+
+ if (line.indexOf("/>") == -1)
+ indent.append(" ");
+
+ }
+ // Add Googletracker.
+
+ out.close();
+
+ }
+
+ catch (Exception ex)
+ {
+
+ ex.printStackTrace();
+
+ System.out.println("\n" + line + "\n");
+
+ System.out
+ .println("Usage: move to Help directory. help2Website will read"
+ + "\nhelpTOC.xml and help.jhm producing output helpTOC.html");
+ }
+ }
+
+}