- throws UnsupportedRuntimeException, LimitExceededException,\r
- JobSubmissionException {\r
+ throws UnsupportedRuntimeException, LimitExceededException, JobSubmissionException {\r
- return WSUtil.analize(sequences, confIUPred, log, "analize",\r
- getLimit(""));\r
+ return WSUtil.analize(sequences, confIUPred, log, "analize", getLimit(""));\r
public String customAnalize(List<FastaSequence> sequences,\r
List<Option<T>> options) throws UnsupportedRuntimeException,\r
LimitExceededException, JobSubmissionException,\r
WrongParameterException {\r
public String customAnalize(List<FastaSequence> sequences,\r
List<Option<T>> options) throws UnsupportedRuntimeException,\r
LimitExceededException, JobSubmissionException,\r
WrongParameterException {\r
ConfiguredExecutable<T> confAACon = init(sequences);\r
// Could not do that! Space separated values\r
// will all be treated as keys! thus duplicates removed\r
ConfiguredExecutable<T> confAACon = init(sequences);\r
// Could not do that! Space separated values\r
// will all be treated as keys! thus duplicates removed\r
List<String> params = WSUtil.getCommands(options,\r
AACon.KEY_VALUE_SEPARATOR);\r
confAACon.addParameters(params);\r
List<String> params = WSUtil.getCommands(options,\r
AACon.KEY_VALUE_SEPARATOR);\r
confAACon.addParameters(params);\r
- return WSUtil.analize(sequences, confAACon, log, "customAnalize",\r
- getLimit(""));\r
+ return WSUtil.analize(sequences, confAACon, log, "customAnalize", getLimit(""));\r
- throws UnsupportedRuntimeException, LimitExceededException,\r
- JobSubmissionException, WrongParameterException {\r
+ throws UnsupportedRuntimeException, LimitExceededException, JobSubmissionException, WrongParameterException {\r
WSUtil.validateAAConInput(sequences);\r
if (preset == null) {\r
throw new WrongParameterException("Preset must be provided!");\r
}\r
WSUtil.validateAAConInput(sequences);\r
if (preset == null) {\r
throw new WrongParameterException("Preset must be provided!");\r
}\r
ConfiguredExecutable<T> confAAcon = init(sequences);\r
confAAcon.addParameters(preset.getOptions());\r
ConfiguredExecutable<T> confAAcon = init(sequences);\r
confAAcon.addParameters(preset.getOptions());\r
- return WSUtil\r
- .analize(sequences, confAAcon, log, "presetAnalize", limit);\r
+ return WSUtil.analize(sequences, confAAcon, log, "presetAnalize", limit);\r