+<DT><A HREF="../compbio/ws/client/Services.html#MAFFT_INFO"><B>MAFFT_INFO</B></A> - \r
+Static variable in enum compbio.ws.client.<A HREF="../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>\r
+<DD> \r
+<DT><A HREF="../compbio/ws/client/AAConClient.html#main(java.lang.String[])"><B>main(String[])</B></A> - \r
+Static method in class compbio.ws.client.<A HREF="../compbio/ws/client/AAConClient.html" title="class in compbio.ws.client">AAConClient</A>\r
+<DD>Starts command line client, if no parameters are supplied prints help.\r
<DT><A HREF="../compbio/ws/client/Jws2Client.html#main(java.lang.String[])"><B>main(String[])</B></A> - \r
Static method in class compbio.ws.client.<A HREF="../compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</A>\r
<DD>Starts command line client, if no parameter are supported print help.\r
<DT><A HREF="../compbio/ws/client/Jws2Client.html#main(java.lang.String[])"><B>main(String[])</B></A> - \r
Static method in class compbio.ws.client.<A HREF="../compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</A>\r
<DD>Starts command line client, if no parameter are supported print help.\r
<DT><A HREF="../compbio/ws/client/WSTester.html#main(java.lang.String[])"><B>main(String[])</B></A> - \r
Static method in class compbio.ws.client.<A HREF="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</A>\r
<DD>Test JWS2 web services\r
<DT><A HREF="../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa"><B>Metadata</B></A><<A HREF="../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>> - Interface in <A HREF="../compbio/data/msa/package-summary.html">compbio.data.msa</A><DD> <DT><A HREF="../compbio/ws/client/MetadataHelper.html" title="class in compbio.ws.client"><B>MetadataHelper</B></A> - Class in <A HREF="../compbio/ws/client/package-summary.html">compbio.ws.client</A><DD> <DT><A HREF="../compbio/ws/client/MetadataHelper.html#MetadataHelper()"><B>MetadataHelper()</B></A> - \r
Constructor for class compbio.ws.client.<A HREF="../compbio/ws/client/MetadataHelper.html" title="class in compbio.ws.client">MetadataHelper</A>\r
<DD> \r
<DT><A HREF="../compbio/ws/client/WSTester.html#main(java.lang.String[])"><B>main(String[])</B></A> - \r
Static method in class compbio.ws.client.<A HREF="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</A>\r
<DD>Test JWS2 web services\r
<DT><A HREF="../compbio/data/msa/Metadata.html" title="interface in compbio.data.msa"><B>Metadata</B></A><<A HREF="../compbio/data/msa/Metadata.html" title="type parameter in Metadata">T</A>> - Interface in <A HREF="../compbio/data/msa/package-summary.html">compbio.data.msa</A><DD> <DT><A HREF="../compbio/ws/client/MetadataHelper.html" title="class in compbio.ws.client"><B>MetadataHelper</B></A> - Class in <A HREF="../compbio/ws/client/package-summary.html">compbio.ws.client</A><DD> <DT><A HREF="../compbio/ws/client/MetadataHelper.html#MetadataHelper()"><B>MetadataHelper()</B></A> - \r
Constructor for class compbio.ws.client.<A HREF="../compbio/ws/client/MetadataHelper.html" title="class in compbio.ws.client">MetadataHelper</A>\r
<DD> \r
-<DT><A HREF="../compbio/data/sequence/Method.html" title="enum in compbio.data.sequence"><B>Method</B></A> - Enum in <A HREF="../compbio/data/sequence/package-summary.html">compbio.data.sequence</A><DD>Enumeration listing of all the supported methods.<DT><A HREF="../compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa"><B>MsaWS</B></A><<A HREF="../compbio/data/msa/MsaWS.html" title="type parameter in MsaWS">T</A>> - Interface in <A HREF="../compbio/data/msa/package-summary.html">compbio.data.msa</A><DD>Multiple Sequence Alignment (MSA) Web Services Interface<DT><A HREF="../compbio/data/sequence/MultiAnnotatedSequence.html" title="class in compbio.data.sequence"><B>MultiAnnotatedSequence</B></A><<A HREF="../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A> extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Enum.html?is-external=true" title="class or interface in java.lang">Enum</A><<A HREF="../compbio/data/sequence/MultiAnnotatedSequence.html" title="type parameter in MultiAnnotatedSequence">T</A>>> - Class in <A HREF="../compbio/data/sequence/package-summary.html">compbio.data.sequence</A><DD>TODO complete<DT><A HREF="../compbio/data/sequence/MultiAnnotatedSequence.html#MultiAnnotatedSequence(java.lang.Class)"><B>MultiAnnotatedSequence(Class<T>)</B></A> - \r
-Constructor for class compbio.data.sequence.<A HREF="../compbio/data/sequence/MultiAnnotatedSequence.html" title="class in compbio.data.sequence">MultiAnnotatedSequence</A>\r
+<DT><A HREF="../compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa"><B>MsaWS</B></A><<A HREF="../compbio/data/msa/MsaWS.html" title="type parameter in MsaWS">T</A>> - Interface in <A HREF="../compbio/data/msa/package-summary.html">compbio.data.msa</A><DD>Multiple Sequence Alignment (MSA) Web Services Interface<DT><A HREF="../compbio/ws/client/Services.html#MUSCLE_INFO"><B>MUSCLE_INFO</B></A> - \r
+Static variable in enum compbio.ws.client.<A HREF="../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>\r