<li><a href="#wisjaba">What is JABAWS?</a></li>\r
<li><a href="#wjaba">JABAWS Benefits</a></li>\r
<li><a href="#alprog">JABA Web Services Programs </a></li>\r
<li><a href="#wisjaba">What is JABAWS?</a></li>\r
<li><a href="#wjaba">JABAWS Benefits</a></li>\r
<li><a href="#alprog">JABA Web Services Programs </a></li>\r
<li><a href="#jabaclient">What is JABAWS Client</a>?</li>\r
<li><a href="#jalviewsup">JABAWS versions compatibility and Jalview support </a></li>\r
<li><a href="#cmdclient">Programmatic access to JABAWS</a></li>\r
<li><a href="#jabaclient">What is JABAWS Client</a>?</li>\r
<li><a href="#jalviewsup">JABAWS versions compatibility and Jalview support </a></li>\r
<li><a href="#cmdclient">Programmatic access to JABAWS</a></li>\r
<p>Multiple Sequence Alignement </p>\r
<ul>\r
<li><a href="http://www.clustal.org/omega">Clustal Omega </a> (version 1.0.2)</li>\r
<p>Multiple Sequence Alignement </p>\r
<ul>\r
<li><a href="http://www.clustal.org/omega">Clustal Omega </a> (version 1.0.2)</li>\r
<li><a href="http://align.bmr.kyushu-u.ac.jp/mafft/software/">Mafft</a> (version 6.857)</li>\r
<li><a href="http://www.drive5.com/muscle">Muscle</a> (version 3.8.31) </li>\r
<li><a href="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html">Tcoffee</a> (version 8.99) </li>\r
<li><a href="http://align.bmr.kyushu-u.ac.jp/mafft/software/">Mafft</a> (version 6.857)</li>\r
<li><a href="http://www.drive5.com/muscle">Muscle</a> (version 3.8.31) </li>\r
<li><a href="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html">Tcoffee</a> (version 8.99) </li>\r
-<h3><a name="jaba2.0.1"/></a>What is new in JABAWS 2.0.1? </h3>\r
-<strong>JABAWS Version 2.0.1 (Released 2nd Jul 2013)</strong><p>JABAWS 2.0.1 includes several bug fixes and minor updates for <a href="#jaba2">JABAWS Version 2</a>. These are listed below:</p>\r
+<h3><a name="jaba2.5"/></a>What is new in JABAWS 2.5? </h3>\r
+<strong>JABAWS Version 2.5 (Released 2nd Jul 2013)</strong><p>JABAWS 2.5 includes several bug fixes and minor updates for <a href="#jaba2">JABAWS Version 2</a>. These are listed below:</p>\r
<ul>\r
<li>Disembl returned swapped strings for HOTLOOPS and REM465</li>\r
<li>Jronn failed to process jobs with more than 3 sequences</li>\r
<ul>\r
<li>Disembl returned swapped strings for HOTLOOPS and REM465</li>\r
<li>Jronn failed to process jobs with more than 3 sequences</li>\r
- JABAWS version 2.0.1 is fully backward compatible with JABAWS v1.0 and v2.0. That means that all JABAWS v1.0 and \r
- v2.0 clients should also be able to use JABAWS 2.0.1 services. To access the analysis web services introduced in\r
+ JABAWS version 2.5 is fully backward compatible with JABAWS v1.0 and v2.0. That means that all JABAWS v1.0 and \r
+ v2.0 clients should also be able to use JABAWS 2.5 services. To access the analysis web services introduced in\r