-<p>Line one loads FASTA sequence from the file<br />\r
- Line two submits them to web service represented by msaws proxy <br />\r
- Line three retrieves the alignment from a web service. This line will block the execution until the result is available. Use this with caution. In general, you should make sure that the calculation has been completed before attempting retrieving results. This is to avoid keeping the connection to the server on hold for a prolonged periods of time. While this may be ok with your local server, our public server (<a href="http://www.compbio.dundee.ac.uk/jabaws">www.compbio.dundee.ac.uk/jabaws</a>) will not let you hold the connection for longer than 10 minutes. This is done to prevent excessive load on the server. The next section describes how to check the status of the calculation.<br />\r
+<p>Line one loads FASTA sequence from the file.<br />\r
+ Line two submits them to web service represented by msaws proxy. <br />\r
+ Line three retrieves the alignment from a web service. This line will block the execution until the result is available. \r
+ Use this with caution. In general, you should make sure that the calculation has been completed before attempting \r
+ retrieving results. This is to avoid keeping the connection to the server on hold for a prolonged periods of time. \r
+ While this may be ok with your local server, our public server \r
+ (<a href="http://www.compbio.dundee.ac.uk/jabaws">www.compbio.dundee.ac.uk/jabaws</a>) will not let you hold the connection \r
+ for longer than 10 minutes. This is done to prevent excessive load on the server. The next section describes how to check \r
+ the status of the calculation.<br />\r