+ <test-method status="PASS" signature="testCommandBuilding()" name="testCommandBuilding" duration-ms="1" started-at="2011-06-23T10:35:12Z" finished-at="2011-06-23T10:35:12Z">
+ </test-method>
+ <test-method status="PASS" signature="testOptionsToCommand()" name="testOptionsToCommand" duration-ms="40" started-at="2011-06-23T10:35:12Z" finished-at="2011-06-23T10:35:12Z">
+ </test-method>
+ <test-method status="PASS" signature="testSpaceDelimiterExecutable()" name="testSpaceDelimiterExecutable" duration-ms="0" started-at="2011-06-23T10:35:12Z" finished-at="2011-06-23T10:35:12Z">
+ </test-method>
+ </class>
+ <class name="compbio.runner._impl.NetNglycTester">
+ <test-method status="PASS" signature="testGetTestCommand()" name="testGetTestCommand" duration-ms="1" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
+ </test-method>
+ </class>
+ <class name="compbio.engine.EngineConfiguratorTester">
+ <test-method status="PASS" signature="testGetAsyncEngine()" name="testGetAsyncEngine" duration-ms="12" started-at="2011-06-23T10:35:07Z" finished-at="2011-06-23T10:35:07Z">
+ </test-method>
+ <test-method status="PASS" signature="testGetSyncEngine()" name="testGetSyncEngine" duration-ms="1" started-at="2011-06-23T10:35:07Z" finished-at="2011-06-23T10:35:07Z">
+ </test-method>
+ </class>
+ <class name="compbio.runner.disorder.GlobPlotTester">
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:37Z" finished-at="2011-06-23T10:36:37Z">
+ </test-method>
+ <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="0" started-at="2011-06-23T10:36:37Z" finished-at="2011-06-23T10:36:37Z">
+ </test-method>
+ <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="43" started-at="2011-06-23T10:36:37Z" finished-at="2011-06-23T10:36:37Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:37Z" finished-at="2011-06-23T10:36:37Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:37Z" finished-at="2011-06-23T10:36:37Z">
+ </test-method>
+ <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="980" started-at="2011-06-23T10:36:37Z" finished-at="2011-06-23T10:36:38Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunLocally()" name="testRunLocally" duration-ms="454" started-at="2011-06-23T10:36:38Z" finished-at="2011-06-23T10:36:38Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:38Z" finished-at="2011-06-23T10:36:38Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunOnCluster()" name="testRunOnCluster" duration-ms="2503" started-at="2011-06-23T10:36:38Z" finished-at="2011-06-23T10:36:41Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:38Z" finished-at="2011-06-23T10:36:38Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunOnClusterAsync()" name="testRunOnClusterAsync" duration-ms="6021" started-at="2011-06-23T10:36:41Z" finished-at="2011-06-23T10:36:47Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:41Z" finished-at="2011-06-23T10:36:41Z">
+ </test-method>
+ </class>
+ <class name="compbio.stat.collector.ExecutionStatCollectorTester">
+ <test-method status="PASS" signature="testCollectStat()" name="testCollectStat" duration-ms="271" started-at="2011-06-23T10:41:52Z" finished-at="2011-06-23T10:41:52Z">
+ </test-method>
+ <test-method status="PASS" signature="testHasCompleted()" name="testHasCompleted" duration-ms="1" started-at="2011-06-23T10:41:52Z" finished-at="2011-06-23T10:41:52Z">
+ </test-method>
+ <test-method status="PASS" signature="testUpdateStatTester()" name="testUpdateStatTester" duration-ms="35012" started-at="2011-06-23T10:41:52Z" finished-at="2011-06-23T10:42:27Z">
+ </test-method>
+ </class>
+ <class name="compbio.engine.local.AsyncLocalRunnerTester">
+ <test-method status="PASS" signature="testAsyncCancelOperation()" name="testAsyncCancelOperation" duration-ms="17" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
+ </test-method>
+ <test-method status="PASS" signature="testAsyncRetrievOperation()" name="testAsyncRetrievOperation" duration-ms="124" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:31Z">
+ </test-method>
+ <test-method status="PASS" signature="testCancelCompletedTaskLocally()" name="testCancelCompletedTaskLocally" duration-ms="3017" started-at="2011-06-23T10:35:31Z" finished-at="2011-06-23T10:35:34Z">
+ </test-method>
+ <test-method status="PASS" signature="testCancelLocally()" name="testCancelLocally" duration-ms="13" started-at="2011-06-23T10:35:34Z" finished-at="2011-06-23T10:35:34Z">
+ <exception class="java.util.concurrent.CancellationException">
+ <full-stacktrace>
+ <![CDATA[java.util.concurrent.CancellationException
+ at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
+ at java.util.concurrent.FutureTask.get(FutureTask.java:83)
+ at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
+ at compbio.engine.local.AsyncLocalRunner.getResults(AsyncLocalRunner.java:130)
+ at compbio.engine.local.AsyncLocalRunnerTester.testCancelLocally(AsyncLocalRunnerTester.java:105)
+ at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
+ at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
+ at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
+ at java.lang.reflect.Method.invoke(Method.java:597)
+ at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
+ at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
+ at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
+ at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
+ at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
+ at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
+ at org.testng.TestRunner.runWorkers(TestRunner.java:759)
+ at org.testng.TestRunner.privateRun(TestRunner.java:592)
+ at org.testng.TestRunner.run(TestRunner.java:486)
+ at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
+ at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
+ at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
+ at org.testng.SuiteRunner.run(SuiteRunner.java:204)
+ at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
+ at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
+ at org.testng.TestNG.run(TestNG.java:784)
+ at org.testng.TestNG.privateMain(TestNG.java:949)
+ at org.testng.TestNG.main(TestNG.java:922)
+]]>
+ </full-stacktrace>
+ </exception>
+ </test-method>
+ <test-method status="PASS" signature="testGetStatus()" name="testGetStatus" duration-ms="19351" started-at="2011-06-23T10:35:34Z" finished-at="2011-06-23T10:35:54Z">
+ </test-method>
+ <test-method status="PASS" signature="testGetStatus()" name="testGetStatus" duration-ms="19362" started-at="2011-06-23T10:35:34Z" finished-at="2011-06-23T10:35:54Z">
+ </test-method>
+ <test-method status="PASS" signature="testGetStatus()" name="testGetStatus" duration-ms="19322" started-at="2011-06-23T10:35:34Z" finished-at="2011-06-23T10:35:54Z">
+ </test-method>
+ <test-method status="PASS" signature="testGetStatus()" name="testGetStatus" duration-ms="19358" started-at="2011-06-23T10:35:34Z" finished-at="2011-06-23T10:35:54Z">
+ </test-method>
+ <test-method status="PASS" signature="testGetStatus()" name="testGetStatus" duration-ms="19298" started-at="2011-06-23T10:35:54Z" finished-at="2011-06-23T10:36:13Z">
+ </test-method>
+ <test-method status="PASS" signature="testMultipleCancelLocally()" name="testMultipleCancelLocally" duration-ms="54" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
+ <exception class="java.util.concurrent.CancellationException">
+ <full-stacktrace>
+ <![CDATA[java.util.concurrent.CancellationException
+ at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
+ at java.util.concurrent.FutureTask.get(FutureTask.java:83)
+ at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
+ at compbio.engine.local.AsyncLocalRunner.getResults(AsyncLocalRunner.java:130)
+ at compbio.engine.local.AsyncLocalRunnerTester.testMultipleCancelLocally(AsyncLocalRunnerTester.java:239)
+ at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
+ at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
+ at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
+ at java.lang.reflect.Method.invoke(Method.java:597)
+ at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
+ at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
+ at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
+ at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
+ at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
+ at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
+ at org.testng.TestRunner.runWorkers(TestRunner.java:759)
+ at org.testng.TestRunner.privateRun(TestRunner.java:592)
+ at org.testng.TestRunner.run(TestRunner.java:486)
+ at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
+ at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
+ at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
+ at org.testng.SuiteRunner.run(SuiteRunner.java:204)
+ at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
+ at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
+ at org.testng.TestNG.run(TestNG.java:784)
+ at org.testng.TestNG.privateMain(TestNG.java:949)
+ at org.testng.TestNG.main(TestNG.java:922)
+]]>
+ </full-stacktrace>
+ </exception>
+ </test-method>
+ <test-method status="PASS" signature="testSubmitLocally()" name="testSubmitLocally" duration-ms="187" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
+ </test-method>
+ <test-method status="PASS" signature="testSubmitLocally()" name="testSubmitLocally" duration-ms="170" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
+ </test-method>
+ <test-method status="PASS" signature="testSubmitLocally()" name="testSubmitLocally" duration-ms="122" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
+ </test-method>
+ <test-method status="PASS" signature="testSubmitLocally()" name="testSubmitLocally" duration-ms="151" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
+ </test-method>
+ <test-method status="PASS" signature="testSubmitLocally()" name="testSubmitLocally" duration-ms="105" started-at="2011-06-23T10:36:13Z" finished-at="2011-06-23T10:36:13Z">
+ </test-method>
+ </class>
+ <class name="compbio.runner.msa.MafftTester">
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:49Z" finished-at="2011-06-23T10:38:49Z">
+ </test-method>
+ <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="516" started-at="2011-06-23T10:38:49Z" finished-at="2011-06-23T10:38:49Z">
+ </test-method>
+ <test-method status="PASS" signature="testClusterExecute()" name="testClusterExecute" duration-ms="1264" started-at="2011-06-23T10:38:49Z" finished-at="2011-06-23T10:38:51Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:49Z" finished-at="2011-06-23T10:38:49Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
+ </test-method>
+ <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="62" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
+ </test-method>
+ <test-method status="PASS" signature="testExecute()" name="testExecute" duration-ms="162" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
+ </test-method>
+ <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="305" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:51Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunOnClusterAsyncCheckStatusLongPoolingTime()" name="testRunOnClusterAsyncCheckStatusLongPoolingTime" duration-ms="5535" started-at="2011-06-23T10:38:51Z" finished-at="2011-06-23T10:38:57Z">
+ </test-method>
+ <test-method status="PASS" signature="testSetInputTester()" name="testSetInputTester" duration-ms="0" started-at="2011-06-23T10:38:57Z" finished-at="2011-06-23T10:38:57Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:38:57Z" finished-at="2011-06-23T10:38:57Z">
+ </test-method>
+ </class>
+ <class name="compbio.data.sequence.ClustalAlignmentUtilTester">
+ <test-method status="PASS" signature="testReadClustalFile()" name="testReadClustalFile" duration-ms="12" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
+ </test-method>
+ <test-method status="PASS" signature="testReadClustalFileLongNames()" name="testReadClustalFileLongNames" duration-ms="19" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
+ </test-method>
+ <test-method status="PASS" signature="testReadClustalFileShortNames()" name="testReadClustalFileShortNames" duration-ms="14" started-at="2011-06-23T10:35:06Z" finished-at="2011-06-23T10:35:06Z">
+ </test-method>
+ </class>
+ <class name="compbio.runner.disorder.IUPredTester">
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
+ </test-method>
+ <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="69" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
+ </test-method>
+ <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="308" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
+ </test-method>
+ <test-method status="PASS" signature="testReadResults()" name="testReadResults" duration-ms="25" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunLocally()" name="testRunLocally" duration-ms="196" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunLocallyWithParams()" name="testRunLocallyWithParams" duration-ms="71" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunOnCluster()" name="testRunOnCluster" duration-ms="3308" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:51Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:47Z" finished-at="2011-06-23T10:36:47Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunOnClusterAsync()" name="testRunOnClusterAsync" duration-ms="6025" started-at="2011-06-23T10:36:51Z" finished-at="2011-06-23T10:36:57Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:51Z" finished-at="2011-06-23T10:36:51Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:57Z" finished-at="2011-06-23T10:36:57Z">
+ </test-method>
+ <test-method status="PASS" signature="testSetParameter()" name="testSetParameter" duration-ms="0" started-at="2011-06-23T10:36:57Z" finished-at="2011-06-23T10:36:57Z">
+ </test-method>
+ </class>
+ <class name="compbio.engine.client.PathValidatorTester">
+ <test-method status="PASS" signature="testGetClassPath()" name="testGetClassPath" duration-ms="1" started-at="2011-06-23T10:35:12Z" finished-at="2011-06-23T10:35:12Z">
+ </test-method>
+ <test-method status="PASS" signature="testIsAbsolutePath()" name="testIsAbsolutePath" duration-ms="0" started-at="2011-06-23T10:35:12Z" finished-at="2011-06-23T10:35:12Z">
+ </test-method>
+ </class>
+ <class name="compbio.stat.collector.StatDBTester">
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="11" started-at="2011-06-23T10:42:27Z" finished-at="2011-06-23T10:42:27Z">
+ </test-method>
+ <test-method status="PASS" signature="testVerifyJobsCount()" name="testVerifyJobsCount" duration-ms="412" started-at="2011-06-23T10:42:27Z" finished-at="2011-06-23T10:42:27Z">
+ </test-method>
+ </class>
+ <class name="compbio.stat.servlet.util.StatCollectionTester">
+ <test-method status="PASS" signature="testGetStats()" name="testGetStats" duration-ms="22" started-at="2011-06-23T10:42:27Z" finished-at="2011-06-23T10:42:27Z">
+ </test-method>
+ </class>
+ <class name="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester">
+ <test-method status="PASS" signature="testCancel()" name="testCancel" duration-ms="1538" started-at="2011-06-23T10:35:26Z" finished-at="2011-06-23T10:35:27Z">
+ </test-method>
+ <test-method status="PASS" signature="testSubmit()" name="testSubmit" duration-ms="3508" started-at="2011-06-23T10:35:27Z" finished-at="2011-06-23T10:35:31Z">
+ </test-method>
+ </class>
+ <class name="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester">
+ <test-method status="PASS" signature="testCancel()" name="testCancel" duration-ms="1257" started-at="2011-06-23T10:35:16Z" finished-at="2011-06-23T10:35:17Z">
+ <exception class="compbio.metadata.ResultNotAvailableException">
+ <message>
+ <![CDATA[java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found!]]>
+ </message>
+ <full-stacktrace>
+ <![CDATA[compbio.metadata.ResultNotAvailableException: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found!
+ at compbio.runner.msa.ClustalW.getResults(ClustalW.java:73)
+ at compbio.runner.msa.ClustalW.getResults(ClustalW.java:34)
+ at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:207)
+ at compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel(DrmaaAsyncClusterEngineTester.java:109)
+ at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
+ at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
+ at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
+ at java.lang.reflect.Method.invoke(Method.java:597)
+ at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:609)
+ at org.testng.internal.Invoker.invokeMethod(Invoker.java:532)
+ at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:686)
+ at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1018)
+ at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:128)
+ at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:112)
+ at org.testng.TestRunner.runWorkers(TestRunner.java:759)
+ at org.testng.TestRunner.privateRun(TestRunner.java:592)
+ at org.testng.TestRunner.run(TestRunner.java:486)
+ at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)
+ at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)
+ at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)
+ at org.testng.SuiteRunner.run(SuiteRunner.java:204)
+ at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:912)
+ at org.testng.TestNG.runSuitesLocally(TestNG.java:876)
+ at org.testng.TestNG.run(TestNG.java:784)
+ at org.testng.TestNG.privateMain(TestNG.java:949)
+ at org.testng.TestNG.main(TestNG.java:922)
+Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found!
+ at compbio.runner.Util.readClustalFile(Util.java:93)
+ at compbio.runner.msa.ClustalW.getResults(ClustalW.java:70)
+ ... 25 more
+]]>
+ </full-stacktrace>
+ </exception>
+ </test-method>
+ <test-method status="PASS" signature="testGetJobStatus()" name="testGetJobStatus" duration-ms="4765" started-at="2011-06-23T10:35:17Z" finished-at="2011-06-23T10:35:22Z">
+ </test-method>
+ <test-method status="PASS" signature="testSubmit()" name="testSubmit" duration-ms="3976" started-at="2011-06-23T10:35:22Z" finished-at="2011-06-23T10:35:26Z">
+ </test-method>
+ </class>
+ <class name="compbio.runner.conservation.AAConTester">
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:14Z">
+ </test-method>
+ <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="1493" started-at="2011-06-23T10:36:14Z" finished-at="2011-06-23T10:36:15Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:15Z" finished-at="2011-06-23T10:36:15Z">
+ </test-method>
+ <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="113" started-at="2011-06-23T10:36:15Z" finished-at="2011-06-23T10:36:15Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:15Z" finished-at="2011-06-23T10:36:15Z">
+ </test-method>
+ <test-method status="PASS" signature="testPersistance()" name="testPersistance" duration-ms="775" started-at="2011-06-23T10:36:15Z" finished-at="2011-06-23T10:36:16Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:16Z" finished-at="2011-06-23T10:36:16Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunLocally()" name="testRunLocally" duration-ms="827" started-at="2011-06-23T10:36:16Z" finished-at="2011-06-23T10:36:17Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunLocallyOnTwoCpu()" name="testRunLocallyOnTwoCpu" duration-ms="289" started-at="2011-06-23T10:36:17Z" finished-at="2011-06-23T10:36:17Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:17Z" finished-at="2011-06-23T10:36:17Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:17Z" finished-at="2011-06-23T10:36:17Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunLocallyWithPreset()" name="testRunLocallyWithPreset" duration-ms="653" started-at="2011-06-23T10:36:17Z" finished-at="2011-06-23T10:36:18Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:18Z" finished-at="2011-06-23T10:36:18Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunOnCluster()" name="testRunOnCluster" duration-ms="3640" started-at="2011-06-23T10:36:18Z" finished-at="2011-06-23T10:36:22Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:22Z" finished-at="2011-06-23T10:36:22Z">
+ </test-method>
+ <test-method status="PASS" signature="testRunOnClusterAsync()" name="testRunOnClusterAsync" duration-ms="5018" started-at="2011-06-23T10:36:22Z" finished-at="2011-06-23T10:36:27Z">
+ </test-method>
+ </class>
+ <class name="compbio.runner.disorder.DisemblTester">
+ <test-method status="PASS" signature="testConfigurationLoading()" name="testConfigurationLoading" duration-ms="44" started-at="2011-06-23T10:36:27Z" finished-at="2011-06-23T10:36:27Z">
+ </test-method>
+ <test-method status="PASS" signature="readStatistics()" name="readStatistics" duration-ms="0" started-at="2011-06-23T10:36:27Z" finished-at="2011-06-23T10:36:27Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:27Z" finished-at="2011-06-23T10:36:27Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="0" started-at="2011-06-23T10:36:27Z" finished-at="2011-06-23T10:36:27Z">
+ </test-method>
+ <test-method status="PASS" signature="init()" name="init" is-config="true" duration-ms="1" started-at="2011-06-23T10:36:27Z" finished-at="2011-06-23T10:36:27Z">