-.project
+/*.project
+/.classpath
+/.settings/*
+!/.settings/org.eclipse.buildship.core.prefs
/dist
+/clover
/classes
/tests
/test-reports
/test-output
-.externalToolBuilders/Jalview Release indices [Builder].launch
+.externalToolBuilders/*
/.DS_Store
.DS_Store
/.com.apple.timemachine.supported
TESTNG
/jalviewApplet.jar
/benchmarking/lib
-*.class
\ No newline at end of file
+*.class
+/site
+/site-resources
+/libjs
+/.gradle
+/build
+/local.properties
+/utils/HelpLinksChecker.out
+/getdown/website
+/getdown/full_app
+/getdown/files
+/getdown/src/getdown/*/target/
+/getdown/src/getdown/core/src/main/java/com/threerings/getdown/data/Build.java
+/getdown/src/getdown/launcher/dependency-reduced-pom.xml
+/utils/install4j/jalview-installers-*.install4j
+/utils/install4j/jalview-install4j-conf.install4j
+*.swp
+/bin
+/.j2s
+/template.html
+/jalviewjsTest.html
+/site1
+/site2
+/resources/.build_properties