FUTURE TODO\r
-Registry for jalview WS - gives list of web services providers\r
+\r
Registry for jalview WS - gives list of web services providers\r
- checks the status of the web services\r
- web service providers gives list of available WS\r
Prepare HMM profile for the user alignment and call jnet - instead of jpred. \r
JPRED REWRITING Wrap Jpred\r
Wrap scanPS \r
-Look at SIFTS at EBI \r
+\r
+CBS soft: \r
+Transmembrane regions\r
+Phosphorilation sites\r
+Glycozilation sites\r
+Signal P\r
+\r
+They all have SOAP WS...\r
+ \r
+CDD domains\r
+PFAM domains\r
\r
JPRED IMPROVEMENTS\r
1) Make sure PSIBLAST does not generate large output (e.g. one approach is to stop on the first iteration\r