-Jalview Release 2.01\r
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+Jalview Readme\r
+--------------\r
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-This is the complete source for Jalview 2.01. \r
-\r
The source is available as a tar file and comes complete with the GNU General Public License. \r
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To build the application you will need a J2SDK 1.4+. \r
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java -Djava.ext.dirs=JALVIEW_HOME/lib -cp JALVIEW_HOME/jalview.jar jalview.bin.Jalview\r
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-Replace JALVIEW_HOME with the full path to Jalview Installation Directory. If using Windows, use backslash "\" instead of forward slash "/"\r
+Replace JALVIEW_HOME with the full path to Jalview Installation Directory.
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+\r
+If you use a proxy server add \r
+\r
+-Dhttp.proxyServer=YOUR.SERVER -Dhttp.proxyPort=YOURPORT\r
+\r
+If the proxy server requires authentication, add\r
+\r
+-Dhttp.proxyUser=USERNAME -Dhttp.proxyPassword=PASSWORD\r