Change disembl paths to project internal

[jabaws.git] / TODO.txt

diff --git a/TODO.txt b/TODO.txt
index 6e70077..f25cd0d 100644 (file)
--- a/TODO.txt
+++ b/TODO.txt
@@ -1,9 +1,20 @@
 TODO: \r
 \r
+Replace conservation.Method with server.ws.Method \r
+and try building WS. If this does not work - get rid of Method\r
+\r
+Output file parsing for stat reporting\r
+cluster engine stat of www-jws2 user\r
+\r
+integrate the above to tweak the size of the local job\r
+\r
+Add AACon ws\r
 Add iupred ws http://iupred.enzim.hu/\r
 Add globprot ws \r
 Add ronn ws\r
 \r
+Philogeny Mrbayes + Philip\r
+ \r
 USE CASE - TURN ALIGNMENT INTO PROFILE AND SEARCH SEQUENCE DATABASE USECASE\r
 - Receive user alignment \r
 - use hmmerbuild to turn it to profile\r
@@ -17,7 +28,7 @@ new parsers for the above programmes output (Stockholm MSA format?)
 \r
 Think hard on what to do with large output files? \r
 e.g. serve the hits table in full, but retrieve alignments on demand.\r
-What actually neeeds to be sent?   \r
+What actually needs to be sent?   \r
 \r
 Add facility to distribute other results of the calculations like the trees and \r
 annotation file for probcons. \r