xsi:schemaLocation="http://java.sun.com/xml/ns/j2ee http://java.sun.com/xml/ns/j2ee/web-app_2_4.xsd"\r
version="2.4">\r
\r
-<display-name>JABAWS</display-name>\r
-<description>JAva Bioinformatics Analysis Web Services (JABAWS) v.2</description>\r
+<display-name>ProteoCache</display-name>\r
+<description>ProteoCache - Results repository for the Dundee Resource</description>\r
\r
+ <welcome-file-list>\r
+ <welcome-file>Index.jsp</welcome-file>\r
+ </welcome-file-list>\r
\r
- <!-- JABAWS listeners -->\r
+ <!-- ProteoCache listeners -->\r
<listener>\r
- <listener-class>compbio.ws.server.MainManager</listener-class>\r
+ <listener-class>compbio.listeners.ContextListener</listener-class>\r
</listener>\r
- <listener>\r
- <listener-class>compbio.stat.servlet.StatisticCollector</listener-class>\r
- </listener>\r
- <listener>\r
- <listener-class>compbio.ws.server.SetExecutableFlag</listener-class>\r
- </listener>\r
- <listener>\r
- <listener-class>com.sun.xml.ws.transport.http.servlet.WSServletContextListener</listener-class>\r
- </listener>\r
-\r
\r
- <!-- Session timeout in minutes -->\r
+ <!-- Session timeout in minutes -->\r
<session-config>\r
<session-timeout>20</session-timeout>\r
</session-config>\r
<load-on-startup>1</load-on-startup>\r
</servlet>\r
\r
-\r
- <!-- JABAWS servlets -->\r
- <servlet>\r
- <description>Display pre-calculated accounting info</description>\r
- <servlet-name>DisplayStat</servlet-name>\r
- <servlet-class>compbio.stat.servlet.DisplayStat</servlet-class>\r
- </servlet>\r
-\r
- <servlet>\r
- <description>WebServices Status</description>\r
- <servlet-name>ServiceStatus</servlet-name>\r
- <servlet-class>compbio.stat.servlet.ServiceStatus</servlet-class>\r
- </servlet>\r
-\r
- <servlet>\r
- <servlet-name>DownloadRedirector</servlet-name>\r
- <servlet-class>compbio.stat.servlet.DownloadRedirector</servlet-class>\r
- </servlet>\r
-\r
- <servlet>\r
- <description>WebService Status with no UI. Accepts web service name as a parameter</description>\r
- <servlet-name>HttpCodeResponseServiceStatus</servlet-name>\r
- <servlet-class>compbio.stat.servlet.HttpCodeResponseServiceStatus</servlet-class>\r
- </servlet>\r
-\r
- <servlet>\r
- <description>Display job list</description>\r
- <servlet-name>Joblist</servlet-name>\r
- <servlet-class>compbio.stat.servlet.Joblist</servlet-class>\r
- </servlet>\r
-\r
- <servlet>\r
- <description>Display monthly summary statistics</description>\r
- <servlet-name>AnnualStat</servlet-name>\r
- <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>\r
- </servlet>\r
-\r
- <servlet>\r
- <description>Display monthly summary statistics with no links to details</description>\r
- <servlet-name>PublicAnnualStat</servlet-name>\r
- <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>\r
- </servlet>\r
-\r
- <servlet>\r
- <servlet-name>RegistryWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
-\r
- <servlet>\r
- <servlet-name>ClustalWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
-\r
- <servlet>\r
- <servlet-name>ClustalOWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
-\r
- <servlet>\r
- <servlet-name>MuscleWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
-\r
- <servlet>\r
- <servlet-name>MafftWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
-\r
- <servlet>\r
- <servlet-name>TcoffeeWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
-\r
- <servlet>\r
- <servlet-name>ProbconsWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
-\r
<servlet>\r
- <servlet-name>MSAprobsWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
-\r
- <servlet>\r
- <servlet-name>GLprobsWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
+ <description>\r
+ </description>\r
+ <display-name>ServletDeleteRecord</display-name>\r
+ <servlet-name>ServletDeleteRecord</servlet-name>\r
+ <servlet-class>compbio.listeners.ServletDeleteRecord</servlet-class>\r
</servlet>\r
-\r
<servlet>\r
- <servlet-name>AAConWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
+ <description>\r
+ </description>\r
+ <display-name>ServletByJobSequence</display-name>\r
+ <servlet-name>ServletByJobSequence</servlet-name>\r
+ <servlet-class>compbio.listeners.ServletByJobSequence</servlet-class>\r
</servlet>\r
-\r
<servlet>\r
- <servlet-name>JronnWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
+ <description>\r
+ </description>\r
+ <display-name>ServletJobsByDay</display-name>\r
+ <servlet-name>ServletJobsByDay</servlet-name>\r
+ <servlet-class>compbio.listeners.ServletJobsByDay</servlet-class>\r
</servlet>\r
\r
- <servlet>\r
- <servlet-name>DisemblWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
-\r
- <servlet>\r
- <servlet-name>GlobPlotWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
-\r
- <servlet>\r
- <servlet-name>IUPredWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
-\r
- <servlet>\r
- <servlet-name>JpredWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
- <servlet>\r
- <servlet-name>RNAalifoldWS</servlet-name>\r
- <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>\r
- <load-on-startup>1</load-on-startup>\r
- </servlet>\r
-\r
- <!-- JABAWS servlet mappings -->\r
- <servlet-mapping>\r
- <servlet-name>listings</servlet-name>\r
- <url-pattern>/</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>DownloadRedirector</servlet-name>\r
- <url-pattern>/download</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>DisplayStat</servlet-name>\r
- <url-pattern>/DisplayStat</url-pattern>\r
- </servlet-mapping>\r
-\r
<servlet-mapping>\r
- <servlet-name>ServiceStatus</servlet-name>\r
- <url-pattern>/ServiceStatus</url-pattern>\r
+ <servlet-name>ServletDeleteRecord</servlet-name>\r
+ <url-pattern>/ServletDeleteRecord</url-pattern>\r
</servlet-mapping>\r
-\r
<servlet-mapping>\r
- <servlet-name>HttpCodeResponseServiceStatus</servlet-name>\r
- <url-pattern>/HttpCodeResponseServiceStatus/*</url-pattern>\r
+ <servlet-name>ServletByJobSequence</servlet-name>\r
+ <url-pattern>/ServletByJobSequence</url-pattern>\r
</servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>AnnualStat</servlet-name>\r
- <url-pattern>/AnnualStat</url-pattern>\r
- </servlet-mapping>\r
-\r
<servlet-mapping>\r
- <servlet-name>PublicAnnualStat</servlet-name>\r
- <url-pattern>/PublicAnnualStat</url-pattern>\r
+ <servlet-name>ServletJobsByDay</servlet-name>\r
+ <url-pattern>/ServletJobsByDay</url-pattern>\r
</servlet-mapping>\r
\r
- <servlet-mapping>\r
- <servlet-name>Joblist</servlet-name>\r
- <url-pattern>/Joblist</url-pattern>\r
- </servlet-mapping>\r
\r
- <servlet-mapping>\r
- <servlet-name>RegistryWS</servlet-name>\r
- <url-pattern>/RegistryWS</url-pattern>\r
- </servlet-mapping>\r
\r
- <servlet-mapping>\r
- <servlet-name>ClustalWS</servlet-name>\r
- <url-pattern>/ClustalWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>ClustalOWS</servlet-name>\r
- <url-pattern>/ClustalOWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>MuscleWS</servlet-name>\r
- <url-pattern>/MuscleWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>MafftWS</servlet-name>\r
- <url-pattern>/MafftWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>TcoffeeWS</servlet-name>\r
- <url-pattern>/TcoffeeWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>ProbconsWS</servlet-name>\r
- <url-pattern>/ProbconsWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>MSAprobsWS</servlet-name>\r
- <url-pattern>/MSAprobsWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>GLprobsWS</servlet-name>\r
- <url-pattern>/GLprobsWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>AAConWS</servlet-name>\r
- <url-pattern>/AAConWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>JronnWS</servlet-name>\r
- <url-pattern>/JronnWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>DisemblWS</servlet-name>\r
- <url-pattern>/DisemblWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>GlobPlotWS</servlet-name>\r
- <url-pattern>/GlobPlotWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>IUPredWS</servlet-name>\r
- <url-pattern>/IUPredWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>JpredWS</servlet-name>\r
- <url-pattern>/JpredWS</url-pattern>\r
- </servlet-mapping>\r
-\r
- <servlet-mapping>\r
- <servlet-name>RNAalifoldWS</servlet-name>\r
- <url-pattern>/RNAalifoldWS</url-pattern>\r
- </servlet-mapping>\r
-\r
-\r
- <!-- JABAWS security constraints -->\r
+ <!-- ProteoCache security constraints -->\r
<security-constraint>\r
<web-resource-collection>\r
<web-resource-name>Administrator pages</web-resource-name>\r
<!-- Prohibit access to any resources -->\r
<url-pattern>/DisplayStat</url-pattern>\r
<url-pattern>/Joblist</url-pattern>\r
- <url-pattern>/AnnualStat</url-pattern>\r
<url-pattern>/conf/*</url-pattern>\r
- <url-pattern>/binaries/*</url-pattern>\r
- <url-pattern>/jobsout/*</url-pattern>\r
<url-pattern>/testsrc/*</url-pattern>\r
<url-pattern>/lib/*</url-pattern>\r
- <url-pattern>/test-output/*</url-pattern>\r
<!-- Uncomment this to secure services status checker \r
<url-pattern>/HttpCodeResponseServiceStatus/*</url-pattern>\r
<url-pattern>/ServiceStatus</url-pattern>\r
<auth-constraint/>\r
</security-constraint>\r
\r
-\r
<!-- Define the Login Configuration for this Application -->\r
<login-config>\r
<auth-method>BASIC</auth-method>\r
- <realm-name>JABAWS administrators</realm-name>\r
+ <realm-name>ProteCache administrators</realm-name>\r
</login-config>\r
\r
\r
<!-- Security roles referenced by this web application -->\r
<security-role>\r
- <description>The role that is required to log in and view JABAWS internals</description>\r
+ <description>The role that is required to log in and view ProteCache internals</description>\r
<role-name>admin</role-name>\r
</security-role>\r
\r