JWS-112 Bumping version of ClustalW (src, binaries and windows) to version 2.1.

[jabaws.git] / binaries / src / clustalw / src / tree / Tree.cpp

diff --git a/binaries/src/clustalw/src/tree/Tree.cpp b/binaries/src/clustalw/src/tree/Tree.cpp
index 48ffa4b..9ceeb1e 100644 (file)
--- a/binaries/src/clustalw/src/tree/Tree.cpp
+++ b/binaries/src/clustalw/src/tree/Tree.cpp
@@ -421,7 +421,7 @@ int Tree::calcSimilarities(clustalw::Alignment* alignPtr, clustalw::DistMatrix*
                 }
             }
         }
-        if (nerrs > 0)
+        if (nerrs > 0 && !userParameters->getGui())
         {
             string errMess = "The following sequences are too divergent to be aligned:\n";