Add GLprobs and MSAprobs to binaries

[jabaws.git] / binaries / src / compilebin.sh

diff --git a/binaries/src/compilebin.sh b/binaries/src/compilebin.sh
old mode 100644 (file)
new mode 100755 (executable)
index 466ecf0..0eee21d
--- a/binaries/src/compilebin.sh
+++ b/binaries/src/compilebin.sh
@@ -10,17 +10,20 @@ make
 chmod +x src/clustalw2 
 cd ..
 
+echo "Compiling Clustal Omega..."
+cd clustalo
+make clean
+chmod +x ./configure 
+./configure
+make
+cd ..
+
 echo "Compiling Mafft..."
 cd mafft/core
 make clean
 make
-chmod +x mafft 
-cd ../..
-cd mafft/binaries
-chmod +x *
 cd ../..
 
-
 echo "Compiling Mafft dependency fasta34..."
 cd fasta34
 rm *.o
@@ -31,9 +34,8 @@ cd ..
 
 echo "Compiling Muscle..."
 cd muscle
-rm -f *.o
+rm -f *.o muscle
 make
-chmod +x muscle
 cd ..
 
 echo "Compiling Probcons..."
@@ -50,3 +52,59 @@ chmod +x install
 ./install t_coffee -force
 chmod +x t_coffee_source/t_coffee
 cd ..
+
+echo "Compiling DisEMBL..."
+cd disembl
+gcc -O3 disembl.c -o disembl
+echo "DONE"
+chmod +x disembl DisEMBL.py
+
+echo "Compiling DisEMBL dependancy Tisean... "
+cd Tisean_3.0.1
+chmod +x ./configure
+./configure
+make
+cp source_c/sav_gol ../
+cd ..
+echo "DONE"
+chmod +x sav_gol
+cd ..
+
+echo "Setting up GlobPlot ..."
+cp disembl/sav_gol globplot/sav_gol
+cd globplot
+chmod +x GlobPlot.py
+echo "DONE"
+cd ..
+
+echo "Compiling IUPred..."
+cd iupred
+make clean
+make 
+echo "DONE"
+cd ..
+
+echo "Compiling Vienna ..."
+cd ViennaRNA
+chmod +x ./configure
+./configure
+make clean
+make
+echo "DONE"
+cd ..
+
+echo "Compiling GLProbs ..."
+cd GLProbs-1.0
+make clean
+make
+echo "DONE"
+cd ..
+
+
+echo "Compiling MSAProbs-0.9.7 ..."
+cd MSAProbs-0.9.7/MSAProbs
+make clean
+make
+echo "DONE"
+cd ../..
+