chmod +x src/clustalw2
cd ..
+echo "Compiling Clustal Omega..."
+cd clustalo
+make clean
+chmod +x ./configure
+./configure
+make
+cd ..
+
echo "Compiling Mafft..."
cd mafft/core
make clean
make
-chmod +x mafft
-cd ../..
-cd mafft/binaries
-chmod +x *
cd ../..
-
echo "Compiling Mafft dependency fasta34..."
cd fasta34
rm *.o
echo "Compiling Muscle..."
cd muscle
-rm -f *.o
+rm -f *.o muscle
make
-chmod +x muscle
cd ..
echo "Compiling Probcons..."
./install t_coffee -force
chmod +x t_coffee_source/t_coffee
cd ..
+
+echo "Compiling DisEMBL..."
+cd disembl
+gcc -O3 disembl.c -o disembl
+echo "DONE"
+chmod +x disembl DisEMBL.py
+
+echo "Compiling DisEMBL dependancy Tisean... "
+cd Tisean_3.0.1
+chmod +x ./configure
+./configure
+make
+cp source_c/sav_gol ../
+cd ..
+echo "DONE"
+chmod +x sav_gol
+cd ..
+
+echo "Setting up GlobPlot ..."
+cp disembl/sav_gol globplot/sav_gol
+cd globplot
+chmod +x GlobPlot.py
+echo "DONE"
+cd ..
+
+echo "Compiling IUPred..."
+cd iupred
+make clean
+make
+echo "DONE"
+cd ..
+
+echo "Compiling Vienna ..."
+cd ViennaRNA
+chmod +x ./configure
+./configure
+make clean
+make
+echo "DONE"
+cd ..
+