new mafft v 6.857 with extensions

[jabaws.git] / binaries / src / mafft / core / multi2hat3s.c

diff --git a/binaries/src/mafft/core/multi2hat3s.c b/binaries/src/mafft/core/multi2hat3s.c
index 9f91018..f747218 100644 (file)
--- a/binaries/src/mafft/core/multi2hat3s.c
+++ b/binaries/src/mafft/core/multi2hat3s.c
@@ -188,6 +188,7 @@ static void pairalign( char name[M][B], int nlen[M], char **seq, double *effarr,
 
        hat3p = fopen( "hat3", "w" );
        if( !hat3p ) ErrorExit( "Cannot open hat3." );
+       fprintf( stderr, "\n" );
        for( i=0; i<njob-1; i++ )
        {
                for( j=i+1; j<njob; j++ )
@@ -204,7 +205,7 @@ static void pairalign( char name[M][B], int nlen[M], char **seq, double *effarr,
                        }
 
 
-                       fprintf( stderr, "adding %d-%d\n", i, j );
+                       fprintf( stderr, "adding %d-%d\r", i, j );
                        putlocalhom2( pseq[0], pseq[1], localhomtable[i]+j, 0, 0, (int)pscore, strlen( pseq[0] ) );
                        for( tmpptr=localhomtable[i]+j; tmpptr; tmpptr=tmpptr->next )
                        {
@@ -214,6 +215,7 @@ static void pairalign( char name[M][B], int nlen[M], char **seq, double *effarr,
                        }
                }
        }
+       fprintf( stderr, "\n" );
        fclose( hat3p );
 
 #if DEBUG