import org.gradle.plugins.ide.eclipse.model.Output
import org.gradle.plugins.ide.eclipse.model.Library
import java.security.MessageDigest
+
import groovy.transform.ExternalizeMethods
-import groovy.util.XmlParser
-import groovy.xml.XmlUtil
buildscript {
dependencies {
- classpath 'org.openclover:clover:4.4.1'
+ classpath 'org.openclover:clover:4.3.1'
}
}
id 'application'
id 'eclipse'
id 'com.github.johnrengelman.shadow' version '4.0.3'
- id 'com.install4j.gradle' version '8.0.2'
- id 'com.dorongold.task-tree' version '1.5' // only needed to display task dependency tree with gradle task1 [task2 ...] taskTree
+ id 'com.install4j.gradle' version '7.0.9'
+ id 'com.dorongold.task-tree' version '1.4' // only needed to display task dependency tree with gradle task1 [task2 ...] taskTree
}
repositories {
}
dependencies {
+ compile 'org.apache.commons:commons-compress:1.18'
}
// in ext the values are cast to Object. Ensure string values are cast as String (and not GStringImpl) for later use
def string(Object o) {
- return o == null ? "" : o.toString()
+ return o.toString()
}
localPropsFIS.close()
p.each {
key, val ->
- def oldval = findProperty(key)
+ def over = getProperty(key) != null
setProperty(key, val)
- if (oldval != null) {
- println("Overriding property '${key}' ('${oldval}') with local.properties value '${val}'")
- } else {
- println("Setting unknown property '${key}' with local.properties value '${val}'")
+ if (over) {
+ println("Overriding property '${key}' with local.properties value '${val}'")
}
}
} catch (Exception e) {
} else {
println("HEADLESS BUILD")
}
+
+ J2S_ENABLED = (project.hasProperty('j2s.compiler.status') && project['j2s.compiler.status'] != null && project['j2s.compiler.status'] == "enable")
+ if (J2S_ENABLED) {
+ println("J2S ENABLED")
+ }
+
/* *-/
System.properties.sort { it.key }.each {
key, val -> println("SYSTEM PROPERTY ${key}='${val}'")
classes = classesDir
getdownWebsiteDir = string("${jalviewDir}/${getdown_website_dir}/${JAVA_VERSION}")
+ getdownDir = string("")
+ reportRsyncCmd = false
buildDist = true
-
- // the following values might be overridden by the CHANNEL switch
- getdownChannelName = CHANNEL.toLowerCase()
- getdownDir = string("${getdownChannelName}/${JAVA_VERSION}")
- getdownAppBase = string("${getdown_channel_base}/${getdownDir}")
+ buildProperties = string("${resourceDir}/${build_properties_file}")
getdownLauncher = string("${jalviewDir}/${getdown_lib_dir}/${getdown_launcher}")
- getdownAppDistDir = getdown_app_dir_alt
- buildProperties = string("${classesDir}/${build_properties_file}")
- reportRsyncCmd = false
- jvlChannelName = CHANNEL.toLowerCase()
switch (CHANNEL) {
case "BUILD":
// TODO: get bamboo build artifact URL for getdown artifacts
getdown_channel_base = bamboo_channelbase
- getdownChannelName = string("${bamboo_planKey}/${JAVA_VERSION}")
- getdownAppBase = string("${bamboo_channelbase}/${bamboo_planKey}${bamboo_getdown_channel_suffix}/${JAVA_VERSION}")
- jvlChannelName += "_${getdownChannelName}"
+ getdown_channel_name = string("${bamboo_planKey}/${JAVA_VERSION}")
+ getdown_app_base = string("${bamboo_channelbase}/${bamboo_planKey}${bamboo_getdown_channel_suffix}/${JAVA_VERSION}")
+ getdown_app_dir = getdown_app_dir_alt
+ buildProperties = string("${resourceDir}/${build_properties_file}")
break
case "RELEASE":
- getdownAppDistDir = getdown_app_dir_release
+ getdown_channel_name = CHANNEL.toLowerCase()
+ getdownDir = string("${getdown_channel_name}/${JAVA_VERSION}")
+ getdown_app_base = string("${getdown_channel_base}/${getdownDir}")
+ getdown_app_dir = getdown_app_dir_release
+ buildProperties = string("${resourceDir}/${build_properties_file}")
reportRsyncCommand = true
+ // Don't ignore transpile errors for release build
+ if (jalviewjs_ignore_transpile_errors.equals("true")) {
+ jalviewjs_ignore_transpile_errors = "false"
+ println("Setting jalviewjs_ignore_transpile_errors to 'false'")
+ }
break
case "ARCHIVE":
- getdownChannelName = CHANNEL.toLowerCase()+"/${JALVIEW_VERSION}"
- getdownDir = string("${getdownChannelName}/${JAVA_VERSION}")
- getdownAppBase = string("${getdown_channel_base}/${getdownDir}")
+ getdown_channel_name = CHANNEL.toLowerCase()+"/${JALVIEW_VERSION}"
+ getdownDir = string("${getdown_channel_name}/${JAVA_VERSION}")
+ getdown_app_base = string("${getdown_channel_base}/${getdownDir}")
+ getdown_app_dir = getdown_app_dir_alt
if (!file("${ARCHIVEDIR}/${packageDir}").exists()) {
- throw new GradleException("Must provide an ARCHIVEDIR value to produce an archive distribution")
+ print "Must provide an ARCHIVEDIR value to produce an archive distribution"
+ exit
} else {
packageDir = string("${ARCHIVEDIR}/${packageDir}")
- buildProperties = string("${ARCHIVEDIR}/${classes_dir}/${build_properties_file}")
+ buildProperties = string("${ARCHIVEDIR}/${resource_dir}/${build_properties_file}")
buildDist = false
}
reportRsyncCommand = true
break
case "ARCHIVELOCAL":
- getdownChannelName = string("archive/${JALVIEW_VERSION}")
- getdownDir = string("${getdownChannelName}/${JAVA_VERSION}")
- getdownAppBase = file(getdownWebsiteDir).toURI().toString()
+ getdown_channel_name = string("archive/${JALVIEW_VERSION}")
+ getdownDir = string("${getdown_channel_name}/${JAVA_VERSION}")
+ getdown_app_base = file(getdownWebsiteDir).toURI().toString()
+ getdown_app_dir = getdown_app_dir_alt
if (!file("${ARCHIVEDIR}/${packageDir}").exists()) {
- throw new GradleException("Must provide an ARCHIVEDIR value to produce an archive distribution")
+ print "Must provide an ARCHIVEDIR value to produce an archive distribution"
+ exit
} else {
packageDir = string("${ARCHIVEDIR}/${packageDir}")
- buildProperties = string("${ARCHIVEDIR}/${classes_dir}/${build_properties_file}")
+ buildProperties = string("${ARCHIVEDIR}/${resource_dir}/${build_properties_file}")
buildDist = false
}
reportRsyncCommand = true
break
case "DEVELOP":
+ getdown_channel_name = CHANNEL.toLowerCase()
+ getdownDir = string("${getdown_channel_name}/${JAVA_VERSION}")
+ getdown_app_base = string("${getdown_channel_base}/${getdownDir}")
+ getdown_app_dir = getdown_app_dir_alt
+ buildProperties = string("${resourceDir}/${build_properties_file}")
reportRsyncCommand = true
break
case "TEST-RELEASE":
+ getdown_channel_name = CHANNEL.toLowerCase()
+ getdownDir = string("${getdown_channel_name}/${JAVA_VERSION}")
+ getdown_app_base = string("${getdown_channel_base}/${getdownDir}")
+ getdown_app_dir = getdown_app_dir_alt
+ buildProperties = string("${resourceDir}/${build_properties_file}")
reportRsyncCommand = true
+ // Don't ignore transpile errors for release build
+ if (jalviewjs_ignore_transpile_errors.equals("true")) {
+ jalviewjs_ignore_transpile_errors = "false"
+ println("Setting jalviewjs_ignore_transpile_errors to 'false'")
+ }
break
case ~/^SCRATCH(|-[-\w]*)$/:
- getdownChannelName = CHANNEL
- getdownDir = string("${getdownChannelName}/${JAVA_VERSION}")
- getdownAppBase = string("${getdown_channel_base}/${getdownDir}")
+ getdown_channel_name = CHANNEL
+ getdownDir = string("${getdown_channel_name}/${JAVA_VERSION}")
+ getdown_app_base = string("${getdown_channel_base}/${getdownDir}")
+ getdown_app_dir = getdown_app_dir_alt
+ buildProperties = string("${resourceDir}/${build_properties_file}")
reportRsyncCommand = true
break
- case "TEST-LOCAL":
- if (!file("${LOCALDIR}").exists()) {
- throw new GradleException("Must provide a LOCALDIR value to produce a local distribution")
- } else {
- getdownAppBase = file(file("${LOCALDIR}").getAbsolutePath()).toURI().toString()
- getdownLauncher = string("${jalviewDir}/${getdown_lib_dir}/${getdown_launcher_local}")
- }
- break
-
case "LOCAL":
- getdownAppBase = file(getdownWebsiteDir).toURI().toString()
+ getdown_app_base = file(getdownWebsiteDir).toURI().toString()
+ getdown_app_dir = getdown_app_dir_alt
+ buildProperties = string("${resourceDir}/${build_properties_file}")
getdownLauncher = string("${jalviewDir}/${getdown_lib_dir}/${getdown_launcher_local}")
break
default: // something wrong specified
- throw new GradleException("CHANNEL must be one of BUILD, RELEASE, ARCHIVE, DEVELOP, TEST-RELEASE, SCRATCH-..., LOCAL [default]")
+ print("CHANNEL must be one of BUILD, RELEASE, ARCHIVE, DEVELOP, TEST-RELEASE, SCRATCH-..., LOCAL [default]")
+ exit
break
}
- // override getdownAppBase if requested
- if (findProperty("getdown_appbase_override") != null) {
- getdownAppBase = string(getProperty("getdown_appbase_override"))
- println("Overriding getdown appbase with '${getdownAppBase}'")
- }
- // sanitise file name for jalview launcher file for this channel
- jvlChannelName = jvlChannelName.replaceAll(/[^\w\-]/,"_")
- getdownAppDir = string("${getdownWebsiteDir}/${getdownAppDistDir}")
+ getdownAppDir = string("${getdownWebsiteDir}/${getdown_app_dir}")
//getdownJ11libDir = "${getdownWebsiteDir}/${getdown_j11lib_dir}"
getdownResourceDir = string("${getdownWebsiteDir}/${getdown_resource_dir}")
getdownInstallDir = string("${getdownWebsiteDir}/${getdown_install_dir}")
compile_source_compatibility = 1.8
compile_target_compatibility = 1.8
// these are getdown.txt properties defined dependent on the JAVA_VERSION
- getdownAltJavaMinVersion = string(findProperty("getdown_alt_java8_min_version"))
- getdownAltJavaMaxVersion = string(findProperty("getdown_alt_java8_max_version"))
+ getdown_alt_java_min_version = getdown_alt_java8_min_version
+ getdown_alt_java_max_version = getdown_alt_java8_max_version
// this property is assigned below and expanded to multiple lines in the getdown task
- getdownAltMultiJavaLocation = string(findProperty("getdown_alt_java8_txt_multi_java_location"))
+ getdown_alt_multi_java_location = getdown_alt_java8_txt_multi_java_location
// this property is for the Java library used in eclipse
- eclipseJavaRuntimeName = string("JavaSE-1.8")
+ eclipse_java_runtime_name = string("JavaSE-1.8")
} else if (JAVA_VERSION.equals("11")) {
JAVA_INTEGER_VERSION = string("11")
libDir = j11libDir
libDistDir = j11libDir
compile_source_compatibility = 11
compile_target_compatibility = 11
- getdownAltJavaMinVersion = string(findProperty("getdown_alt_java11_min_version"))
- getdownAltJavaMaxVersion = string(findProperty("getdown_alt_java11_max_version"))
- getdownAltMultiJavaLocation = string(findProperty("getdown_alt_java11_txt_multi_java_location"))
- eclipseJavaRuntimeName = string("JavaSE-11")
+ getdown_alt_java_min_version = getdown_alt_java11_min_version
+ getdown_alt_java_max_version = getdown_alt_java11_max_version
+ getdown_alt_multi_java_location = getdown_alt_java11_txt_multi_java_location
+ eclipse_java_runtime_name = string("JavaSE-11")
/* compile without modules -- using classpath libraries
additional_compiler_args += [
'--module-path', modules_compileClasspath.asPath,
libDistDir = j11libDir
compile_source_compatibility = JAVA_VERSION
compile_target_compatibility = JAVA_VERSION
- getdownAltJavaMinVersion = string(findProperty("getdown_alt_java11_min_version"))
- getdownAltJavaMaxVersion = string(findProperty("getdown_alt_java11_max_version"))
- getdownAltMultiJavaLocation = string(findProperty("getdown_alt_java11_txt_multi_java_location"))
- eclipseJavaRuntimeName = string("JavaSE-11")
+ getdown_alt_java_min_version = getdown_alt_java11_min_version
+ getdown_alt_java_max_version = getdown_alt_java11_max_version
+ getdown_alt_multi_java_location = getdown_alt_java11_txt_multi_java_location
+ eclipse_java_runtime_name = string("JavaSE-11")
/* compile without modules -- using classpath libraries
additional_compiler_args += [
'--module-path', modules_compileClasspath.asPath,
// for install4j
- JAVA_MIN_VERSION = JAVA_VERSION
- JAVA_MAX_VERSION = JAVA_VERSION
- def jreInstallsDir = string(jre_installs_dir)
- if (jreInstallsDir.startsWith("~/")) {
- jreInstallsDir = System.getProperty("user.home") + jreInstallsDir.substring(1)
- }
- macosJavaVMDir = string("${jreInstallsDir}/jre-${JAVA_INTEGER_VERSION}-mac-x64/jre")
- macosJavaVMTgz = string("${jreInstallsDir}/tgz/jre-${JAVA_INTEGER_VERSION}-mac-x64.tar.gz")
- windowsJavaVMDir = string("${jreInstallsDir}/jre-${JAVA_INTEGER_VERSION}-windows-x64/jre")
- windowsJavaVMTgz = string("${jreInstallsDir}/tgz/jre-${JAVA_INTEGER_VERSION}-windows-x64.tar.gz")
- linuxJavaVMDir = string("${jreInstallsDir}/jre-${JAVA_INTEGER_VERSION}-linux-x64/jre")
- linuxJavaVMTgz = string("${jreInstallsDir}/tgz/jre-${JAVA_INTEGER_VERSION}-linux-x64.tar.gz")
- install4jDir = string("${jalviewDir}/${install4j_utils_dir}")
- install4jConfFileName = string("jalview-install4j-conf.install4j")
- install4jConfFile = file("${install4jDir}/${install4jConfFileName}")
- install4jHomeDir = install4j_home_dir
- if (install4jHomeDir.startsWith("~/")) {
- install4jHomeDir = System.getProperty("user.home") + install4jHomeDir.substring(1)
- }
-
+ macosJavaVMDir = string("${System.env.HOME}/buildtools/jre/openjdk-java_vm/getdown/macos-jre${JAVA_VERSION}/jre")
+ macosJavaVMTgz = string("${System.env.HOME}/buildtools/jre/openjdk-java_vm/install4j/tgz/macos-jre${JAVA_VERSION}.tar.gz")
+ windowsJavaVMDir = string("${System.env.HOME}/buildtools/jre/openjdk-java_vm/getdown/windows-jre${JAVA_VERSION}/jre")
+ windowsJavaVMTgz = string("${System.env.HOME}/buildtools/jre/openjdk-java_vm/install4j/tgz/windows-jre${JAVA_VERSION}.tar.gz")
+ install4jDir = string("${jalviewDir}/${install4jResourceDir}")
+ install4jConfFileName = string("jalview-installers-java${JAVA_VERSION}.install4j")
+ install4jConfFile = string("${install4jDir}/${install4jConfFileName}")
buildingHTML = string("${jalviewDir}/${docDir}/building.html")
helpFile = string("${classesDir}/${help_dir}/help.jhm")
helpParentDir = string("${jalviewDir}/${help_parent_dir}")
- helpSourceDir = string("${helpParentDir}/${help_dir}")
+ helpDir = string("${help_dir}")
+ helpSourceDir = string("${helpParentDir}/${helpDir}")
relativeBuildDir = file(jalviewDirAbsolutePath).toPath().relativize(buildDir.toPath())
jalviewjsJ2sSettingsFileName = string("${jalviewDir}/${jalviewjs_j2s_settings}")
jalviewjsJ2sProps = null
+ eclipseJavaVersion = "55"
+ jalviewjsJ2sPlugin = jalviewjs_j2s_plugin
+ if (IN_ECLIPSE) {
+ //def eclipseJavaVersion = System.property["java.class.version"]
+ if (Float.parseFloat(eclipseJavaVersion) >= 55 && file(jalviewjs_j2s_plugin_j11).exists()) { // 55 is Java 11
+ jalviewjsJ2sPlugin = jalviewjs_j2s_plugin_j11
+ }
+ }
eclipseWorkspace = null
eclipseBinary = string("")
eclipseVersion = string("")
eclipseDebug = false
+ eclipseJavaVersion = string("")
// ENDEXT
}
resources {
srcDirs resourceDir
- srcDirs += helpParentDir
}
jar.destinationDir = file("${jalviewDir}/${packageDir}")
compileClasspath = files(sourceSets.main.java.outputDir)
- //compileClasspath += files(sourceSets.main.resources.srcDirs)
compileClasspath += fileTree(dir: "${jalviewDir}/${libDir}", include: ["*.jar"])
runtimeClasspath = compileClasspath
compileClasspath = files( sourceSets.test.java.outputDir )
if (use_clover) {
- compileClasspath = sourceSets.clover.compileClasspath
+ compileClasspath += sourceSets.clover.compileClasspath
} else {
compileClasspath += files(sourceSets.main.java.outputDir)
}
// clover bits
dependencies {
if (use_clover) {
- cloverCompile 'org.openclover:clover:4.4.1'
- testCompile 'org.openclover:clover:4.4.1'
+ cloverCompile 'org.openclover:clover:4.3.1'
+ testCompile 'org.openclover:clover:4.3.1'
}
}
}
cp.entries.removeAll(removeTheseToo)
- //cp.entries += new Output("${eclipse_bin_dir}/main")
- if (file(helpParentDir).isDirectory()) {
- cp.entries += new Library(fileReference(helpParentDir))
+ cp.entries += new Output("${eclipse_bin_dir}/main")
+ if (file(helpSourceDir).isDirectory()) {
+ cp.entries += new Library(fileReference(helpSourceDir))
}
if (file(resourceDir).isDirectory()) {
cp.entries += new Library(fileReference(resourceDir))
HashMap<String, Boolean> alreadyAddedLibPath = new HashMap<>();
- sourceSets.main.compileClasspath.findAll { it.name.endsWith(".jar") }.any {
+ sourceSets.main.compileClasspath.findAll { it.name.endsWith(".jar") }.each {
//don't want to add outputDir as eclipse is using its own output dir in bin/main
if (it.isDirectory() || ! it.exists()) {
// don't add dirs to classpath, especially if they don't exist
}
}
+ //fileTree(dir: "$jalviewDir/$utilsDir", include: ["test*/*.jar"]).each {
sourceSets.test.compileClasspath.findAll { it.name.endsWith(".jar") }.any {
//no longer want to add outputDir as eclipse is using its own output dir in bin/main
if (it.isDirectory() || ! it.exists()) {
// for the IDE, use java 11 compatibility
sourceCompatibility = compile_source_compatibility
targetCompatibility = compile_target_compatibility
- javaRuntimeName = eclipseJavaRuntimeName
+ javaRuntimeName = eclipse_java_runtime_name
// add in jalview project specific properties/preferences into eclipse core preferences
+ // and also the codestyle XML file
file {
withProperties { props ->
def jalview_prefs = new Properties()
props.putAt(t, v)
}
}
+ // codestyle file -- overrides previous formatter prefs
+ def csFile = file("${jalviewDirAbsolutePath}/${eclipse_codestyle_file}")
+ if (csFile.exists()) {
+ XmlParser parser = new XmlParser()
+ def profiles = parser.parse(csFile)
+ def profile = profiles.'profile'.find { p -> (p.'@kind' == "CodeFormatterProfile" && p.'@name' == "Jalview") }
+ if (profile != null) {
+ profile.'setting'.each { s ->
+ def id = s.'@id'
+ def value = s.'@value'
+ if (id != null && value != null) {
+ props.putAt(id, value)
+ }
+ }
+ }
+ }
}
}
if (IN_ECLIPSE) {
// Don't want these to be activated if in headless build
synchronizationTasks "eclipseSynchronizationTask"
- autoBuildTasks "eclipseAutoBuildTask"
+ //autoBuildTasks "eclipseAutoBuildTask"
}
}
task cloverInstr() {
// only instrument source, we build test classes as normal
- inputs.files files (sourceSets.main.allJava,sourceSets.test.allJava) // , fileTree(dir:"$jalviewDir/$testSourceDir", include: ["**/*.java"]))
+ inputs.files files (sourceSets.main.allJava) // , fileTree(dir: testSourceDir, include: ["**/*.java"]))
outputs.dir cloverInstrDir
doFirst {
task createBuildProperties(type: WriteProperties) {
+ group = "build"
+ description = "Create the ${buildProperties} file"
dependsOn setGitVals
inputs.dir(sourceDir)
inputs.dir(resourceDir)
}
+clean {
+ doFirst {
+ delete buildProperties
+ }
+}
+
+
task cleanBuildingHTML(type: Delete) {
doFirst {
delete buildingHTML
}
def hostname = "hostname".execute().text.trim()
- def buildtoolsPandoc = System.getProperty("user.home")+"/buildtools/pandoc/bin/pandoc"
- if ((pandoc == null || ! file(pandoc).exists()) && file(buildtoolsPandoc).exists()) {
+ if ((pandoc == null || ! file(pandoc).exists()) && hostname.equals("jv-bamboo")) {
pandoc = System.getProperty("user.home")+"/buildtools/pandoc/bin/pandoc"
}
task copyHelp(type: Copy) {
def inputDir = helpSourceDir
- def outputDir = "${classesDir}/${help_dir}"
+ def outputDir = "${classesDir}/${helpDir}"
from(inputDir) {
exclude '**/*.gif'
exclude '**/*.jpg'
task syncResources(type: Sync) {
+ dependsOn createBuildProperties
from resourceDir
include "**/*.*"
into "${classesDir}"
dependsOn copyHelp
classpath = sourceSets.main.compileClasspath
main = "com.sun.java.help.search.Indexer"
- workingDir = "${classesDir}/${help_dir}"
+ workingDir = "${classesDir}/${helpDir}"
def argDir = "html"
args = [ argDir ]
inputs.dir("${workingDir}/${argDir}")
classpath = files("${jalviewDir}/${utilsDir}")
main = "HelpLinksChecker"
workingDir = jalviewDir
- args = [ "${classesDir}/${help_dir}", "-nointernet" ]
+ def help = "${classesDir}/${helpDir}"
+ args = [ "${classesDir}/${helpDir}", "-nointernet" ]
def outFOS = new FileOutputStream(helpLinksCheckerOutFile, false) // false == don't append
def errFOS = outFOS
outFOS,
errorOutput)
- inputs.dir("${classesDir}/${help_dir}")
+ inputs.dir("${classesDir}/${helpDir}")
outputs.file(helpLinksCheckerOutFile)
}
// import the pubhtmlhelp target
ant.properties.basedir = "${jalviewDir}"
-ant.properties.helpBuildDir = "${jalviewDirAbsolutePath}/${classes_dir}/${help_dir}"
+ant.properties.helpBuildDir = "${jalviewDirAbsolutePath}/${classes_dir}/${helpDir}"
ant.importBuild "${utilsDir}/publishHelp.xml"
}
}
+
jar {
dependsOn linkCheck
dependsOn buildIndices
def getdownWebsiteResourceFilenames = []
def getdownTextString = ""
def getdownResourceDir = getdownResourceDir
+ def getdownAppDir = getdownAppDir
def getdownResourceFilenames = []
doFirst {
rename(build_properties_file, getdown_build_properties)
into getdownAppDir
}
- getdownWebsiteResourceFilenames += "${getdownAppDistDir}/${getdown_build_properties}"
+ getdownWebsiteResourceFilenames += "${getdown_app_dir}/${getdown_build_properties}"
// go through properties looking for getdown_txt_...
def props = project.properties.sort { it.key }
- if (getdownAltJavaMinVersion != null && getdownAltJavaMinVersion.length() > 0) {
- props.put("getdown_txt_java_min_version", getdownAltJavaMinVersion)
- }
- if (getdownAltJavaMaxVersion != null && getdownAltJavaMaxVersion.length() > 0) {
- props.put("getdown_txt_java_max_version", getdownAltJavaMaxVersion)
+ if (getdown_alt_java_min_version.length() > 0) {
+ props.put("getdown_txt_java_min_version", getdown_alt_java_min_version)
}
- if (getdownAltMultiJavaLocation != null && getdownAltMultiJavaLocation.length() > 0) {
- props.put("getdown_txt_multi_java_location", getdownAltMultiJavaLocation)
+ if (getdown_alt_java_max_version.length() > 0) {
+ props.put("getdown_txt_java_max_version", getdown_alt_java_max_version)
}
+ props.put("getdown_txt_multi_java_location", getdown_alt_multi_java_location)
- props.put("getdown_txt_appbase", getdownAppBase)
+ props.put("getdown_txt_appbase", getdown_app_base)
props.each{ prop, val ->
if (prop.startsWith("getdown_txt_") && val != null) {
if (prop.startsWith("getdown_txt_multi_")) {
}
codeFiles.sort().each{f ->
def name = f.getName()
- def line = "code = ${getdownAppDistDir}/${name}\n"
+ def line = "code = ${getdown_app_dir}/${name}\n"
getdownTextString += line
copy {
from f.getPath()
def getdown_txt = file("${getdownWebsiteDir}/getdown.txt")
getdown_txt.write(getdownTextString)
- def getdownLaunchJvl = getdown_launch_jvl_name + ( (jvlChannelName != null && jvlChannelName.length() > 0)?"-${jvlChannelName}":"" ) + ".jvl"
- def launchJvl = file("${getdownWebsiteDir}/${getdownLaunchJvl}")
- launchJvl.write("appbase="+props.get("getdown_txt_appbase"))
+ def launch_jvl = file("${getdownWebsiteDir}/${getdown_launch_jvl}")
+ launch_jvl.write("appbase="+props.get("getdown_txt_appbase"))
copy {
from getdownLauncher
copy {
from getdown_txt
- from launchJvl
+ from launch_jvl
from getdownLauncher
from "${getdownWebsiteDir}/${getdown_build_properties}"
if (file(getdownLauncher).getName() != getdown_launcher) {
}
-// a helper task to allow getdown digest of any dir: `gradle getdownDigestDir -PDIGESTDIR=/path/to/my/random/getdown/dir
-task getdownDigestDir(type: JavaExec) {
- def digestDirPropertyName = "DIGESTDIR"
- description = "Digest a local dir (-P${digestDirPropertyName}=...) for getdown"
- doFirst {
- classpath = files(getdownLauncher)
- def digestDir = findProperty(digestDirPropertyName)
- if (digestDir == null) {
- throw new GradleException("Must provide a DIGESTDIR value to produce an alternative getdown digest")
- }
- args digestDir
- }
- main = "com.threerings.getdown.tools.Digester"
-}
-
-
task getdownDigest(type: JavaExec) {
group = "distribution"
description = "Digest the getdown website folder"
dependsOn getdownWebsite
doFirst {
- classpath = files(getdownLauncher)
+ classpath = files("${getdownWebsiteDir}/${getdown_launcher}")
}
main = "com.threerings.getdown.tools.Digester"
args getdownWebsiteDir
install4j {
- if (file(install4jHomeDir).exists()) {
- // good to go!
- } else if (file(System.getProperty("user.home")+"/buildtools/install4j").exists()) {
+ def install4jHomeDir = "/opt/install4j"
+ def hostname = "hostname".execute().text.trim()
+ if (hostname.equals("jv-bamboo")) {
+ install4jHomeDir = System.getProperty("user.home")+"/buildtools/install4j"
+ } else if (OperatingSystem.current().isMacOsX()) {
+ install4jHomeDir = '/Applications/install4j.app/Contents/Resources/app'
+ if (! file(install4jHomeDir).exists()) {
+ install4jHomeDir = System.getProperty("user.home")+install4jHomeDir
+ }
+ } else if (OperatingSystem.current().isLinux()) {
install4jHomeDir = System.getProperty("user.home")+"/buildtools/install4j"
- } else if (file("/Applications/install4j.app/Contents/Resources/app").exists()) {
- install4jHomeDir = "/Applications/install4j.app/Contents/Resources/app"
}
- installDir(file(install4jHomeDir))
-
- mediaTypes = Arrays.asList(install4j_media_types.split(","))
+ installDir = file(install4jHomeDir)
+ mediaTypes = Arrays.asList(install4jMediaTypes.split(","))
+ if (install4jFaster.equals("true")) {
+ faster = true
+ }
}
-task copyInstall4jTemplate {
- def install4jTemplateFile = file("${install4jDir}/${install4j_template}")
- def install4jFileAssociationsFile = file("${install4jDir}/${install4j_installer_file_associations}")
- inputs.file(install4jTemplateFile)
- inputs.file(install4jFileAssociationsFile)
- outputs.file(install4jConfFile)
-
- doLast {
- def install4jConfigXml = new XmlParser().parse(install4jTemplateFile)
-
- // turn off code signing if no OSX_KEYPASS
+task copyInstall4jTemplate(type: Copy) {
+ from (install4jDir) {
+ include install4jTemplate
+ rename (install4jTemplate, install4jConfFileName)
+ filter(ReplaceTokens,
+ beginToken: '',
+ endToken: '',
+ tokens: [
+ '9999999999': JAVA_VERSION
+ ]
+ )
+ filter(ReplaceTokens,
+ beginToken: '$$',
+ endToken: '$$',
+ tokens: [
+ 'JAVA_VERSION': JAVA_VERSION,
+ 'JAVA_INTEGER_VERSION': JAVA_INTEGER_VERSION,
+ 'VERSION': JALVIEW_VERSION,
+ 'MACOS_JAVA_VM_DIR': macosJavaVMDir,
+ 'MACOS_JAVA_VM_TGZ': macosJavaVMTgz,
+ 'WINDOWS_JAVA_VM_DIR': windowsJavaVMDir,
+ 'WINDOWS_JAVA_VM_TGZ': windowsJavaVMTgz,
+ 'INSTALL4JINFOPLISTFILEASSOCIATIONS': install4jInfoPlistFileAssociations,
+ 'COPYRIGHT_MESSAGE': install4jCopyrightMessage,
+ 'MACOS_BUNDLE_ID': install4jMacOSBundleId,
+ 'GETDOWN_RESOURCE_DIR': getdown_resource_dir,
+ 'GETDOWN_DIST_DIR': getdown_app_dir,
+ 'GETDOWN_ALT_DIR': getdown_app_dir_alt,
+ 'GETDOWN_INSTALL_DIR': getdown_install_dir
+ ]
+ )
if (OSX_KEYPASS == "") {
- install4jConfigXml.'**'.codeSigning.each { codeSigning ->
- codeSigning.'@macEnabled' = "false"
- }
- install4jConfigXml.'**'.windows.each { windows ->
- windows.'@runPostProcessor' = "false"
- }
- }
-
- // turn off checksum creation for LOCAL channel
- def e = install4jConfigXml.application[0]
- if (CHANNEL == "LOCAL") {
- e.'@createChecksums' = "false"
- } else {
- e.'@createChecksums' = "true"
- }
-
- // put file association actions where placeholder action is
- def install4jFileAssociationsText = install4jFileAssociationsFile.text
- def fileAssociationActions = new XmlParser().parseText("<actions>${install4jFileAssociationsText}</actions>")
- install4jConfigXml.'**'.action.any { a ->
- if (a.'@name' == 'EXTENSIONS_REPLACED_BY_GRADLE') {
- def parent = a.parent()
- parent.remove(a)
- fileAssociationActions.each { faa ->
- parent.append(faa)
- }
- // don't need to continue in .any loop once replacements have been made
- return true
- }
+ filter(ReplaceTokens,
+ beginToken: 'codeSigning macEnabled="',
+ endToken: '"',
+ tokens: [
+ 'true': 'codeSigning macEnabled="false"'
+ ]
+ )
+ filter(ReplaceTokens,
+ beginToken: 'runPostProcessor="true" ',
+ endToken: 'Processor',
+ tokens: [
+ 'post': 'runPostProcessor="false" postProcessor'
+ ]
+ )
}
+ }
+ into install4jDir
+ outputs.files(install4jConfFile)
- // write install4j file
- install4jConfFile.text = XmlUtil.serialize(install4jConfigXml)
+ doLast {
+ // include file associations in installer
+ def installerFileAssociationsXml = file("${install4jDir}/${install4jInstallerFileAssociations}").text
+ ant.replaceregexp(
+ byline: false,
+ flags: "s",
+ match: '<action name="EXTENSIONS_REPLACED_BY_GRADLE".*?</action>',
+ replace: installerFileAssociationsXml,
+ file: install4jConfFile
+ )
+ /*
+ // include uninstaller applescript app files in dmg
+ def installerDMGUninstallerXml = file("$install4jDir/$install4jDMGUninstallerAppFiles").text
+ ant.replaceregexp(
+ byline: false,
+ flags: "s",
+ match: '<file name="UNINSTALL_OLD_JALVIEW_APP_REPLACED_IN_GRADLE" file=.*?>',
+ replace: installerDMGUninstallerXml,
+ file: install4jConfFile
+ )
+ */
}
}
task installers(type: com.install4j.gradle.Install4jTask) {
group = "distribution"
description = "Create the install4j installers"
- dependsOn setGitVals
dependsOn getdown
dependsOn copyInstall4jTemplate
-
- projectFile = install4jConfFile
-
- // create an md5 for the input files to use as version for install4j conf file
- def digest = MessageDigest.getInstance("MD5")
- digest.update(
- (file("${install4jDir}/${install4j_template}").text +
- file("${install4jDir}/${install4j_info_plist_file_associations}").text +
- file("${install4jDir}/${install4j_installer_file_associations}").text).bytes)
- def filesMd5 = new BigInteger(1, digest.digest()).toString(16)
- if (filesMd5.length() >= 8) {
- filesMd5 = filesMd5.substring(0,8)
- }
- def install4jTemplateVersion = "${JALVIEW_VERSION}_F${filesMd5}_C${gitHash}"
- // make install4jBuildDir relative to jalviewDir
- def install4jBuildDir = "${install4j_build_dir}/${JAVA_VERSION}"
-
- variables = [
- 'JALVIEW_NAME': getdown_txt_title,
- 'JALVIEW_DIR': "../..",
- 'OSX_KEYSTORE': OSX_KEYSTORE,
- 'JSIGN_SH': JSIGN_SH,
- 'JRE_DIR': getdown_app_dir_java,
- 'INSTALLER_TEMPLATE_VERSION': install4jTemplateVersion,
- 'JALVIEW_VERSION': JALVIEW_VERSION,
- 'JAVA_MIN_VERSION': JAVA_MIN_VERSION,
- 'JAVA_MAX_VERSION': JAVA_MAX_VERSION,
- 'JAVA_VERSION': JAVA_VERSION,
- 'JAVA_INTEGER_VERSION': JAVA_INTEGER_VERSION,
- 'VERSION': JALVIEW_VERSION,
- 'MACOS_JAVA_VM_DIR': macosJavaVMDir,
- 'WINDOWS_JAVA_VM_DIR': windowsJavaVMDir,
- 'LINUX_JAVA_VM_DIR': linuxJavaVMDir,
- 'MACOS_JAVA_VM_TGZ': macosJavaVMTgz,
- 'WINDOWS_JAVA_VM_TGZ': windowsJavaVMTgz,
- 'LINUX_JAVA_VM_TGZ': linuxJavaVMTgz,
- 'COPYRIGHT_MESSAGE': install4j_copyright_message,
- 'MACOS_BUNDLE_ID': install4j_macOS_bundle_id,
- 'INSTALLER_NAME': install4j_installer_name,
- 'INSTALL4J_UTILS_DIR': install4j_utils_dir,
- 'GETDOWN_WEBSITE_DIR': getdown_website_dir,
- 'GETDOWN_FILES_DIR': getdown_files_dir,
- 'GETDOWN_RESOURCE_DIR': getdown_resource_dir,
- 'GETDOWN_DIST_DIR': getdownAppDistDir,
- 'GETDOWN_ALT_DIR': getdown_app_dir_alt,
- 'GETDOWN_INSTALL_DIR': getdown_install_dir,
- 'INFO_PLIST_FILE_ASSOCIATIONS_FILE': install4j_info_plist_file_associations,
- 'BUILD_DIR': install4jBuildDir,
- ]
-
- destination = "${jalviewDir}/${install4jBuildDir}"
+ projectFile = file(install4jConfFile)
+ variables = [majorVersion: version.substring(2, 11), build: 001, OSX_KEYSTORE: OSX_KEYSTORE, JSIGN_SH: JSIGN_SH]
+ destination = "${jalviewDir}/${install4jBuildDir}/${JAVA_VERSION}"
buildSelected = true
- if (install4j_faster.equals("true") || CHANNEL.startsWith("LOCAL")) {
- faster = true
- disableSigning = true
- }
-
if (OSX_KEYPASS) {
- macKeystorePassword = OSX_KEYPASS
+ macKeystorePassword=OSX_KEYPASS
}
doFirst {
inputs.dir(getdownWebsiteDir)
inputs.file(install4jConfFile)
- inputs.file("${install4jDir}/${install4j_info_plist_file_associations}")
inputs.dir(macosJavaVMDir)
inputs.dir(windowsJavaVMDir)
- outputs.dir("${jalviewDir}/${install4j_build_dir}/${JAVA_VERSION}")
+ outputs.dir("${jalviewDir}/${install4jBuildDir}/${JAVA_VERSION}")
}
-task sourceDist(type: Tar) {
+task sourceDist (type: Tar) {
def VERSION_UNDERSCORES = JALVIEW_VERSION.replaceAll("\\.", "_")
def outputFileName = "${project.name}_${VERSION_UNDERSCORES}.tar.gz"
into project.name
- def EXCLUDE_FILES=[
- "build/*",
- "bin/*",
- "test-output/",
- "test-reports",
- "tests",
- "clover*/*",
- ".*",
- "benchmarking/*",
- "**/.*",
- "*.class",
- "**/*.class","$j11modDir/**/*.jar","appletlib","**/*locales",
- "*locales/**",
- "utils/InstallAnywhere",
- "**/*.log",
- ]
- def PROCESS_FILES=[
- "AUTHORS",
- "CITATION",
- "FEATURETODO",
- "JAVA-11-README",
- "FEATURETODO",
- "LICENSE",
- "**/README",
- "RELEASE",
- "THIRDPARTYLIBS",
- "TESTNG",
- "build.gradle",
- "gradle.properties",
- "**/*.java",
- "**/*.html",
- "**/*.xml",
- "**/*.gradle",
- "**/*.groovy",
- "**/*.properties",
- "**/*.perl",
- "**/*.sh",
- ]
- def INCLUDE_FILES=[
- ".settings/org.eclipse.jdt.core.jalview.prefs",
- ]
+ def EXCLUDE_FILES=["build/*","bin/*","test-output/","test-reports","tests","clover*/*"
+ ,".*"
+ ,"benchmarking/*"
+ ,"**/.*"
+ ,"*.class"
+ ,"**/*.class","${j11modDir}/**/*.jar","appletlib","**/*locales"
+ ,"*locales/**",
+ ,"utils/InstallAnywhere"]
+ def PROCESS_FILES=[ "AUTHORS",
+ "CITATION",
+ "FEATURETODO",
+ "JAVA-11-README",
+ "FEATURETODO",
+ "LICENSE",
+ "**/README",
+ "RELEASE",
+ "THIRDPARTYLIBS","TESTNG",
+ "build.gradle",
+ "gradle.properties",
+ "**/*.java",
+ "**/*.html",
+ "**/*.xml",
+ "**/*.gradle",
+ "**/*.groovy",
+ "**/*.properties",
+ "**/*.perl",
+ "**/*.sh"]
from(jalviewDir) {
exclude (EXCLUDE_FILES)
exclude (getdown_website_dir)
// exluding these as not using jars as modules yet
- exclude ("$j11modDir/**/*.jar")
- }
- from(jalviewDir) {
- include(INCLUDE_FILES)
- }
-// from (jalviewDir) {
-// // explicit includes for stuff that seemed to not get included
-// include(fileTree("test/**/*."))
-// exclude(EXCLUDE_FILES)
-// exclude(PROCESS_FILES)
-// }
+ exclude ("${j11modDir}/**/*.jar")
+ }
+ // from (jalviewDir) {
+ // // explicit includes for stuff that seemed to not get included
+ // include(fileTree("test/**/*."))
+ // exclude(EXCLUDE_FILES)
+ // exclude(PROCESS_FILES)
+ // }
}
-task helppages {
+task helppages {
dependsOn copyHelp
dependsOn pubhtmlhelp
- inputs.dir("${classesDir}/${help_dir}")
- outputs.dir("${buildDir}/distributions/${help_dir}")
+ inputs.dir("${classesDir}/${helpDir}")
+ outputs.dir("${buildDir}/distributions/${helpDir}")
+}
+
+
+task j2sSetHeadlessBuild {
+ doFirst {
+ IN_ECLIPSE = false
+ }
+}
+
+
+task jalviewjsSetEclipseWorkspace {
+ def propKey = "jalviewjs_eclipse_workspace"
+ def propVal = null
+ if (project.hasProperty(propKey)) {
+ propVal = project.getProperty(propKey)
+ if (propVal.startsWith("~/")) {
+ propVal = System.getProperty("user.home") + propVal.substring(1)
+ }
+ }
+ def propsFileName = "${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_eclipse_workspace_location_file}"
+ def propsFile = file(propsFileName)
+ def eclipseWsDir = propVal
+ def props = new Properties()
+
+ def writeProps = true
+ if (( eclipseWsDir == null || !file(eclipseWsDir).exists() ) && propsFile.exists()) {
+ def ins = new FileInputStream(propsFileName)
+ props.load(ins)
+ ins.close()
+ if (props.getProperty(propKey, null) != null) {
+ eclipseWsDir = props.getProperty(propKey)
+ writeProps = false
+ }
+ }
+
+ if (eclipseWsDir == null || !file(eclipseWsDir).exists()) {
+ def tempDir = File.createTempDir()
+ eclipseWsDir = tempDir.getAbsolutePath()
+ writeProps = true
+ }
+ eclipseWorkspace = file(eclipseWsDir)
+
+ doFirst {
+ // do not run a headless transpile when we claim to be in Eclipse
+ if (IN_ECLIPSE) {
+ println("Skipping task ${name} as IN_ECLIPSE=${IN_ECLIPSE}")
+ throw new StopExecutionException("Not running headless transpile whilst IN_ECLIPSE is '${IN_ECLIPSE}'")
+ } else {
+ println("Running task ${name} as IN_ECLIPSE=${IN_ECLIPSE}")
+ }
+
+ if (writeProps) {
+ props.setProperty(propKey, eclipseWsDir)
+ propsFile.parentFile.mkdirs()
+ def bytes = new ByteArrayOutputStream()
+ props.store(bytes, null)
+ def propertiesString = bytes.toString()
+ propsFile.text = propertiesString
+ print("NEW ")
+ } else {
+ print("EXISTING ")
+ }
+
+ println("ECLIPSE WORKSPACE: "+eclipseWorkspace.getPath())
+ }
+
+ //inputs.property(propKey, eclipseWsDir) // eclipseWsDir only gets set once this task runs, so will be out-of-date
+ outputs.file(propsFileName)
+ outputs.upToDateWhen { eclipseWorkspace.exists() && propsFile.exists() }
+}
+
+
+task jalviewjsEclipsePaths {
+ def eclipseProduct
+
+ def eclipseRoot = jalviewjs_eclipse_root
+ if (eclipseRoot.startsWith("~/")) {
+ eclipseRoot = System.getProperty("user.home") + eclipseRoot.substring(1)
+ }
+ if (OperatingSystem.current().isMacOsX()) {
+ eclipseRoot += "/Eclipse.app"
+ eclipseBinary = "${eclipseRoot}/Contents/MacOS/eclipse"
+ eclipseProduct = "${eclipseRoot}/Contents/Eclipse/.eclipseproduct"
+ } else if (OperatingSystem.current().isWindows()) { // check these paths!!
+ if (file("${eclipseRoot}/eclipse").isDirectory() && file("${eclipseRoot}/eclipse/.eclipseproduct").exists()) {
+ eclipseRoot += "/eclipse.exe"
+ }
+ eclipseBinary = "${eclipseRoot}/eclipse"
+ eclipseProduct = "${eclipseRoot}/.eclipseproduct"
+ } else { // linux or unix
+ if (file("${eclipseRoot}/eclipse").isDirectory() && file("${eclipseRoot}/eclipse/.eclipseproduct").exists()) {
+ eclipseRoot += "/eclipse"
+ }
+ eclipseBinary = "${eclipseRoot}/eclipse"
+ eclipseProduct = "${eclipseRoot}/.eclipseproduct"
+ }
+
+ eclipseVersion = "4.13" // default
+ def assumedVersion = true
+ if (file(eclipseProduct).exists()) {
+ def fis = new FileInputStream(eclipseProduct)
+ def props = new Properties()
+ props.load(fis)
+ eclipseVersion = props.getProperty("version")
+ fis.close()
+ assumedVersion = false
+ }
+
+ def propKey = "eclipse_debug"
+ eclipseDebug = (project.hasProperty(propKey) && project.getProperty(propKey).equals("true"))
+
+ doFirst {
+ // do not run a headless transpile when we claim to be in Eclipse
+ if (IN_ECLIPSE) {
+ println("Skipping task ${name} as IN_ECLIPSE=${IN_ECLIPSE}")
+ throw new StopExecutionException("Not running headless transpile whilst IN_ECLIPSE is '${IN_ECLIPSE}'")
+ } else {
+ println("Running task ${name} as IN_ECLIPSE=${IN_ECLIPSE}")
+ }
+
+ if (!assumedVersion) {
+ println("ECLIPSE VERSION=${eclipseVersion}")
+ }
+ }
+}
+
+
+task printProperties {
+ group "Debug"
+ description "Output to console all System.properties"
+ doFirst {
+ System.properties.each { key, val -> System.out.println("Property: ${key}=${val}") }
+ }
+}
+
+
+task eclipseSetup {
+ dependsOn eclipseProject
+ dependsOn eclipseClasspath
+ dependsOn eclipseJdt
+}
+
+
+// this version (type: Copy) will delete anything in the eclipse dropins folder that isn't in fromDropinsDir
+task jalviewjsEclipseCopyDropins(type: Copy) {
+ dependsOn jalviewjsEclipsePaths
+
+ def inputFiles = fileTree(dir: "${jalviewDir}/${jalviewjs_eclipse_dropins_dir}", include: "*.jar")
+ inputFiles += file("${jalviewDir}/${jalviewjsJ2sPlugin}")
+ def outputDir = "${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_eclipse_tmp_dropins_dir}"
+
+ from inputFiles
+ into outputDir
+}
+
+
+// this eclipse -clean doesn't actually work
+task jalviewjsCleanEclipse(type: Exec) {
+ dependsOn eclipseSetup
+ dependsOn jalviewjsEclipsePaths
+ dependsOn jalviewjsEclipseCopyDropins
+
+ executable(eclipseBinary)
+ args(["-nosplash", "--launcher.suppressErrors", "-data", eclipseWorkspace.getPath(), "-clean", "-console", "-consoleLog"])
+ if (eclipseDebug) {
+ args += "-debug"
+ }
+ args += "-l"
+
+ def inputString = """exit
+y
+"""
+ def inputByteStream = new ByteArrayInputStream(inputString.getBytes())
+ standardInput = inputByteStream
+}
+
+/* not really working yet
+jalviewjsEclipseCopyDropins.finalizedBy jalviewjsCleanEclipse
+*/
+
+
+task jalviewjsTransferUnzipSwingJs {
+ def file_zip = "${jalviewDir}/${jalviewjs_swingjs_zip}"
+
+ doLast {
+ copy {
+ from zipTree(file_zip)
+ into "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}"
+ }
+ }
+
+ inputs.file file_zip
+ outputs.dir "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}"
+}
+
+
+task jalviewjsTransferUnzipLib {
+ def zipFiles = fileTree(dir: "${jalviewDir}/${jalviewjs_libjs_dir}", include: "*.zip")
+
+ doLast {
+ zipFiles.each { file_zip ->
+ copy {
+ from zipTree(file_zip)
+ into "${jalviewDir}/${jalviewjsTransferSiteLibDir}"
+ }
+ }
+ }
+
+ inputs.files zipFiles
+ outputs.dir "${jalviewDir}/${jalviewjsTransferSiteLibDir}"
+}
+
+
+task jalviewjsTransferUnzipAllLibs {
+ dependsOn jalviewjsTransferUnzipSwingJs
+ dependsOn jalviewjsTransferUnzipLib
+}
+
+
+task jalviewjsCreateJ2sSettings(type: WriteProperties) {
+ group "JalviewJS"
+ description "Create the .j2s file from the j2s.* properties"
+
+ jalviewjsJ2sProps = project.properties.findAll { it.key.startsWith("j2s.") }.sort { it.key }
+ def siteDirProperty = "j2s.site.directory"
+ def setSiteDir = false
+ jalviewjsJ2sProps.each { prop, val ->
+ if (val != null) {
+ if (prop == siteDirProperty) {
+ if (!(val.startsWith('/') || val.startsWith("file://") )) {
+ val = "${jalviewDir}/${jalviewjsTransferSiteJsDir}/${val}"
+ }
+ setSiteDir = true
+ }
+ property(prop,val)
+ }
+ if (!setSiteDir) { // default site location, don't override specifically set property
+ property(siteDirProperty,"${jalviewDirRelativePath}/${jalviewjsTransferSiteJsDir}")
+ }
+ }
+ outputFile = jalviewjsJ2sSettingsFileName
+
+ if (! IN_ECLIPSE) {
+ inputs.properties(jalviewjsJ2sProps)
+ outputs.file(jalviewjsJ2sSettingsFileName)
+ }
+}
+
+
+task jalviewjsEclipseSetup {
+ dependsOn jalviewjsEclipseCopyDropins
+ dependsOn jalviewjsSetEclipseWorkspace
+ dependsOn jalviewjsCreateJ2sSettings
+}
+
+
+task jalviewjsSyncAllLibs (type: Sync) {
+ dependsOn jalviewjsTransferUnzipAllLibs
+ def inputFiles = fileTree(dir: "${jalviewDir}/${jalviewjsTransferSiteLibDir}")
+ inputFiles += fileTree(dir: "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}")
+ def outputDir = "${jalviewDir}/${jalviewjsSiteDir}"
+
+ from inputFiles
+ into outputDir
+ def outputFiles = []
+ rename { filename ->
+ outputFiles += "${outputDir}/${filename}"
+ null
+ }
+ preserve {
+ include "**"
+ }
+ outputs.files outputFiles
+ inputs.files inputFiles
+}
+
+
+task jalviewjsSyncResources (type: Sync) {
+ def inputFiles = fileTree(dir: resourceDir)
+ def outputDir = "${jalviewDir}/${jalviewjsSiteDir}/${jalviewjs_j2s_subdir}"
+
+ from inputFiles
+ into outputDir
+ def outputFiles = []
+ rename { filename ->
+ outputFiles += "${outputDir}/${filename}"
+ null
+ }
+ preserve {
+ include "**"
+ }
+ outputs.files outputFiles
+ inputs.files inputFiles
+}
+
+
+task jalviewjsSyncSiteResources (type: Sync) {
+ def inputFiles = fileTree(dir: "${jalviewDir}/${jalviewjs_site_resource_dir}")
+ def outputDir = "${jalviewDir}/${jalviewjsSiteDir}"
+
+ from inputFiles
+ into outputDir
+ def outputFiles = []
+ rename { filename ->
+ outputFiles += "${outputDir}/${filename}"
+ null
+ }
+ preserve {
+ include "**"
+ }
+ outputs.files outputFiles
+ inputs.files inputFiles
+}
+
+
+task jalviewjsSyncBuildProperties (type: Sync) {
+ dependsOn createBuildProperties
+ def inputFiles = [file(buildProperties)]
+ def outputDir = "${jalviewDir}/${jalviewjsSiteDir}/${jalviewjs_j2s_subdir}"
+
+ from inputFiles
+ into outputDir
+ def outputFiles = []
+ rename { filename ->
+ outputFiles += "${outputDir}/${filename}"
+ null
+ }
+ preserve {
+ include "**"
+ }
+ outputs.files outputFiles
+ inputs.files inputFiles
}
-// LARGE AMOUNT OF JALVIEWJS STUFF DELETED HERE
-task eclipseAutoBuildTask {}
-task eclipseSynchronizationTask {}
+
+task jalviewjsProjectImport(type: Exec) {
+ dependsOn eclipseSetup
+ dependsOn jalviewjsEclipsePaths
+ dependsOn jalviewjsEclipseSetup
+
+ doFirst {
+ // do not run a headless import when we claim to be in Eclipse
+ if (IN_ECLIPSE) {
+ println("Skipping task ${name} as IN_ECLIPSE=${IN_ECLIPSE}")
+ throw new StopExecutionException("Not running headless import whilst IN_ECLIPSE is '${IN_ECLIPSE}'")
+ } else {
+ println("Running task ${name} as IN_ECLIPSE=${IN_ECLIPSE}")
+ }
+ }
+
+ //def projdir = eclipseWorkspace.getPath()+"/.metadata/.plugins/org.eclipse.core.resources/.projects/jalview/org.eclipse.jdt.core"
+ def projdir = eclipseWorkspace.getPath()+"/.metadata/.plugins/org.eclipse.core.resources/.projects/jalview"
+ executable(eclipseBinary)
+ args(["-nosplash", "--launcher.suppressErrors", "-application", "com.seeq.eclipse.importprojects.headlessimport", "-data", eclipseWorkspace.getPath(), "-import", jalviewDirAbsolutePath])
+ if (eclipseDebug) {
+ args += "-debug"
+ }
+ args += [ "--launcher.appendVmargs", "-vmargs", "-Dorg.eclipse.equinox.p2.reconciler.dropins.directory=${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_eclipse_tmp_dropins_dir}" ]
+ if (!IN_ECLIPSE) {
+ args += [ "-D${j2sHeadlessBuildProperty}=true" ]
+ }
+
+ inputs.file("${jalviewDir}/.project")
+ outputs.upToDateWhen {
+ file(projdir).exists()
+ }
+}
+
+
+task jalviewjsTranspile(type: Exec) {
+ dependsOn jalviewjsEclipseSetup
+ dependsOn jalviewjsProjectImport
+ dependsOn jalviewjsEclipsePaths
+
+ doFirst {
+ // do not run a headless transpile when we claim to be in Eclipse
+ if (IN_ECLIPSE) {
+ println("Skipping task ${name} as IN_ECLIPSE=${IN_ECLIPSE}")
+ throw new StopExecutionException("Not running headless transpile whilst IN_ECLIPSE is '${IN_ECLIPSE}'")
+ } else {
+ println("Running task ${name} as IN_ECLIPSE=${IN_ECLIPSE}")
+ }
+ }
+
+ executable(eclipseBinary)
+ args(["-nosplash", "--launcher.suppressErrors", "-application", "org.eclipse.jdt.apt.core.aptBuild", "-data", eclipseWorkspace, "-${jalviewjs_eclipse_build_arg}", eclipse_project_name ])
+ if (eclipseDebug) {
+ args += "-debug"
+ }
+ args += [ "--launcher.appendVmargs", "-vmargs", "-Dorg.eclipse.equinox.p2.reconciler.dropins.directory=${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_eclipse_tmp_dropins_dir}" ]
+ if (!IN_ECLIPSE) {
+ args += [ "-D${j2sHeadlessBuildProperty}=true" ]
+ }
+
+ def stdout
+ def stderr
+ doFirst {
+ stdout = new ByteArrayOutputStream()
+ stderr = new ByteArrayOutputStream()
+
+ def logOutFileName = "${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}"
+ def logOutFile = file(logOutFileName)
+ logOutFile.createNewFile()
+ logOutFile.text = """ROOT: ${jalviewjs_eclipse_root}
+BINARY: ${eclipseBinary}
+VERSION: ${eclipseVersion}
+WORKSPACE: ${eclipseWorkspace}
+DEBUG: ${eclipseDebug}
+----
+"""
+ def logOutFOS = new FileOutputStream(logOutFile, true) // true == append
+ // combine stdout and stderr
+ def logErrFOS = logOutFOS
+
+ if (jalviewjs_j2s_to_console.equals("true")) {
+ standardOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ new org.apache.tools.ant.util.TeeOutputStream(
+ logOutFOS,
+ stdout),
+ standardOutput)
+ errorOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ new org.apache.tools.ant.util.TeeOutputStream(
+ logErrFOS,
+ stderr),
+ errorOutput)
+ } else {
+ standardOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ logOutFOS,
+ stdout)
+ errorOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ logErrFOS,
+ stderr)
+ }
+ }
+
+ doLast {
+ if (stdout.toString().contains("Error processing ")) {
+ // j2s did not complete transpile
+ //throw new TaskExecutionException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
+ if (jalviewjs_ignore_transpile_errors.equals("true")) {
+ println("IGNORING TRANSPILE ERRORS")
+ println("See eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
+ } else {
+ throw new GradleException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
+ }
+ }
+ }
+
+ inputs.dir("${jalviewDir}/${sourceDir}")
+ outputs.dir("${jalviewDir}/${jalviewjsTransferSiteJsDir}")
+ outputs.upToDateWhen( { file("${jalviewDir}/${jalviewjsTransferSiteJsDir}${jalviewjs_server_resource}").exists() } )
+}
+
+
+def jalviewjsCallCore(String name, FileCollection list, String prefixFile, String suffixFile, String jsfile, String zjsfile, File logOutFile, Boolean logOutConsole) {
+
+ def stdout = new ByteArrayOutputStream()
+ def stderr = new ByteArrayOutputStream()
+
+ def coreFile = file(jsfile)
+ def msg = ""
+ msg = "Creating core for ${name}...\nGenerating ${jsfile}"
+ println(msg)
+ logOutFile.createNewFile()
+ logOutFile.append(msg+"\n")
+
+ def coreTop = file(prefixFile)
+ def coreBottom = file(suffixFile)
+ coreFile.getParentFile().mkdirs()
+ coreFile.createNewFile()
+ coreFile.write( coreTop.text )
+ list.each {
+ f ->
+ if (f.exists()) {
+ def t = f.text
+ t.replaceAll("Clazz\\.([^_])","Clazz_${1}")
+ coreFile.append( t )
+ } else {
+ msg = "...file '"+f.getPath()+"' does not exist, skipping"
+ println(msg)
+ logOutFile.append(msg+"\n")
+ }
+ }
+ coreFile.append( coreBottom.text )
+
+ msg = "Generating ${zjsfile}"
+ println(msg)
+ logOutFile.append(msg+"\n")
+ def logOutFOS = new FileOutputStream(logOutFile, true) // true == append
+ def logErrFOS = logOutFOS
+
+ javaexec {
+ classpath = files(["${jalviewDir}/tools/closure_compiler.jar"])
+ args = [ "--js", jsfile, "--js_output_file", zjsfile ]
+ maxHeapSize = "2g"
+
+ msg = "\nRunning '"+commandLine.join(' ')+"'\n"
+ println(msg)
+ logOutFile.append(msg+"\n")
+
+ if (logOutConsole) {
+ standardOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ new org.apache.tools.ant.util.TeeOutputStream(
+ logOutFOS,
+ stdout),
+ standardOutput)
+ errorOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ new org.apache.tools.ant.util.TeeOutputStream(
+ logErrFOS,
+ stderr),
+ errorOutput)
+ } else {
+ standardOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ logOutFOS,
+ stdout)
+ errorOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ logErrFOS,
+ stderr)
+ }
+ }
+ msg = "--"
+ println(msg)
+ logOutFile.append(msg+"\n")
+}
+
+
+task jalviewjsBuildAllCores {
+ group "JalviewJS"
+ description "Build the core js lib closures listed in the classlists dir"
+ dependsOn jalviewjsTranspile
+ dependsOn jalviewjsTransferUnzipSwingJs
+
+ def j2sDir = "${jalviewDir}/${jalviewjsTransferSiteJsDir}/${jalviewjs_j2s_subdir}"
+ def swingJ2sDir = "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}/${jalviewjs_j2s_subdir}"
+ def libJ2sDir = "${jalviewDir}/${jalviewjsTransferSiteLibDir}/${jalviewjs_j2s_subdir}"
+ def jsDir = "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}/${jalviewjs_js_subdir}"
+ def outputDir = "${jalviewDir}/${jalviewjsTransferSiteCoreDir}/${jalviewjs_j2s_subdir}/core"
+ def prefixFile = "${jsDir}/core/coretop2.js"
+ def suffixFile = "${jsDir}/core/corebottom2.js"
+
+ inputs.file prefixFile
+ inputs.file suffixFile
+
+ def classlistFiles = []
+ // add the classlists found int the jalviewjs_classlists_dir
+ fileTree(dir: "${jalviewDir}/${jalviewjs_classlists_dir}", include: "*.txt").each {
+ file ->
+ def name = file.getName() - ".txt"
+ classlistFiles += [
+ 'file': file,
+ 'name': name
+ ]
+ }
+
+ // _jmol and _jalview cores. Add any other peculiar classlist.txt files here
+ //classlistFiles += [ 'file': file("${jalviewDir}/${jalviewjs_classlist_jmol}"), 'name': "_jvjmol" ]
+ classlistFiles += [ 'file': file("${jalviewDir}/${jalviewjs_classlist_jalview}"), 'name': jalviewjsJalviewCoreName ]
+
+ jalviewjsCoreClasslists = []
+
+ classlistFiles.each {
+ hash ->
+
+ def file = hash['file']
+ if (! file.exists()) {
+ //println("...classlist file '"+file.getPath()+"' does not exist, skipping")
+ return false // this is a "continue" in groovy .each closure
+ }
+ def name = hash['name']
+ if (name == null) {
+ name = file.getName() - ".txt"
+ }
+
+ def filelist = []
+ file.eachLine {
+ line ->
+ filelist += line
+ }
+ def list = fileTree(dir: j2sDir, includes: filelist)
+
+ def jsfile = "${outputDir}/core${name}.js"
+ def zjsfile = "${outputDir}/core${name}.z.js"
+
+ jalviewjsCoreClasslists += [
+ 'jsfile': jsfile,
+ 'zjsfile': zjsfile,
+ 'list': list,
+ 'name': name
+ ]
+
+ inputs.file(file)
+ inputs.files(list)
+ outputs.file(jsfile)
+ outputs.file(zjsfile)
+ }
+
+ // _stevesoft core. add any cores without a classlist here (and the inputs and outputs)
+ def stevesoftClasslistName = "_stevesoft"
+ def stevesoftClasslist = [
+ 'jsfile': "${outputDir}/core${stevesoftClasslistName}.js",
+ 'zjsfile': "${outputDir}/core${stevesoftClasslistName}.z.js",
+ 'list': fileTree(dir: j2sDir, include: "com/stevesoft/pat/**/*.js"),
+ 'name': stevesoftClasslistName
+ ]
+ jalviewjsCoreClasslists += stevesoftClasslist
+ inputs.files(stevesoftClasslist['list'])
+ outputs.file(stevesoftClasslist['jsfile'])
+ outputs.file(stevesoftClasslist['zjsfile'])
+
+ // _all core
+ def allClasslistName = "_all"
+ def allJsFiles = fileTree(dir: j2sDir, include: "**/*.js")
+ allJsFiles += fileTree(
+ dir: libJ2sDir,
+ include: "**/*.js",
+ excludes: [
+ // these exlusions are files that the closure-compiler produces errors for. Should fix them
+ "**/org/jmol/jvxl/readers/IsoIntersectFileReader.js",
+ "**/org/jmol/export/JSExporter.js"
+ ]
+ )
+ allJsFiles += fileTree(
+ dir: swingJ2sDir,
+ include: "**/*.js",
+ excludes: [
+ // these exlusions are files that the closure-compiler produces errors for. Should fix them
+ "**/sun/misc/Unsafe.js",
+ "**/swingjs/jquery/jquery-editable-select.js",
+ "**/swingjs/jquery/j2sComboBox.js",
+ "**/sun/misc/FloatingDecimal.js"
+ ]
+ )
+ def allClasslist = [
+ 'jsfile': "${outputDir}/core${allClasslistName}.js",
+ 'zjsfile': "${outputDir}/core${allClasslistName}.z.js",
+ 'list': allJsFiles,
+ 'name': allClasslistName
+ ]
+ // not including this version of "all" core at the moment
+ //jalviewjsCoreClasslists += allClasslist
+ inputs.files(allClasslist['list'])
+ outputs.file(allClasslist['jsfile'])
+ outputs.file(allClasslist['zjsfile'])
+
+ doFirst {
+ def logOutFile = file("${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_j2s_closure_stdout}")
+ logOutFile.getParentFile().mkdirs()
+ logOutFile.createNewFile()
+ logOutFile.write(getDate("yyyy-MM-dd HH:mm:ss")+" jalviewjsBuildAllCores\n----\n")
+
+ jalviewjsCoreClasslists.each {
+ jalviewjsCallCore(it.name, it.list, prefixFile, suffixFile, it.jsfile, it.zjsfile, logOutFile, jalviewjs_j2s_to_console.equals("true"))
+ }
+ }
+
+}
+
+
+def jalviewjsPublishCoreTemplate(String coreName, String templateName, File inputFile, String outputFile) {
+ copy {
+ from inputFile
+ into file(outputFile).getParentFile()
+ rename { filename ->
+ if (filename.equals(inputFile.getName())) {
+ return file(outputFile).getName()
+ }
+ return null
+ }
+ filter(ReplaceTokens,
+ beginToken: '_',
+ endToken: '_',
+ tokens: [
+ 'MAIN': '"'+mainClass+'"',
+ 'CODE': "null",
+ 'NAME': jalviewjsJalviewTemplateName+" [core ${coreName}]",
+ 'COREKEY': jalviewjs_core_key,
+ 'CORENAME': coreName
+ ]
+ )
+ }
+}
+
+
+task jalviewjsPublishCoreTemplates {
+ dependsOn jalviewjsBuildAllCores
+ def inputFileName = "${jalviewDir}/${j2s_coretemplate_html}"
+ def inputFile = file(inputFileName)
+ def outputDir = "${jalviewDir}/${jalviewjsTransferSiteCoreDir}"
+
+ def outputFiles = []
+ jalviewjsCoreClasslists.each { cl ->
+ def outputFile = "${outputDir}/${jalviewjsJalviewTemplateName}_${cl.name}.html"
+ cl['outputfile'] = outputFile
+ outputFiles += outputFile
+ }
+
+ doFirst {
+ jalviewjsCoreClasslists.each { cl ->
+ jalviewjsPublishCoreTemplate(cl.name, jalviewjsJalviewTemplateName, inputFile, cl.outputfile)
+ }
+ }
+ inputs.file(inputFile)
+ outputs.files(outputFiles)
+}
+
+
+task jalviewjsSyncCore (type: Sync) {
+ dependsOn jalviewjsBuildAllCores
+ dependsOn jalviewjsPublishCoreTemplates
+ def inputFiles = fileTree(dir: "${jalviewDir}/${jalviewjsTransferSiteCoreDir}")
+ def outputDir = "${jalviewDir}/${jalviewjsSiteDir}"
+
+ from inputFiles
+ into outputDir
+ def outputFiles = []
+ rename { filename ->
+ outputFiles += "${outputDir}/${filename}"
+ null
+ }
+ preserve {
+ include "**"
+ }
+ outputs.files outputFiles
+ inputs.files inputFiles
+}
+
+
+// this Copy version of TransferSiteJs will delete anything else in the target dir
+task jalviewjsCopyTransferSiteJs(type: Copy) {
+ dependsOn jalviewjsTranspile
+ from "${jalviewDir}/${jalviewjsTransferSiteJsDir}"
+ into "${jalviewDir}/${jalviewjsSiteDir}"
+}
+
+
+// this Sync version of TransferSite is used by buildship to keep the website automatically up to date when a file changes
+task jalviewjsSyncTransferSiteJs(type: Sync) {
+ from "${jalviewDir}/${jalviewjsTransferSiteJsDir}"
+ include "**/*.*"
+ into "${jalviewDir}/${jalviewjsSiteDir}"
+ preserve {
+ include "**"
+ }
+}
+
+
+jalviewjsSyncAllLibs.mustRunAfter jalviewjsCopyTransferSiteJs
+jalviewjsSyncResources.mustRunAfter jalviewjsCopyTransferSiteJs
+jalviewjsSyncSiteResources.mustRunAfter jalviewjsCopyTransferSiteJs
+jalviewjsSyncBuildProperties.mustRunAfter jalviewjsCopyTransferSiteJs
+
+jalviewjsSyncAllLibs.mustRunAfter jalviewjsSyncTransferSiteJs
+jalviewjsSyncResources.mustRunAfter jalviewjsSyncTransferSiteJs
+jalviewjsSyncSiteResources.mustRunAfter jalviewjsSyncTransferSiteJs
+jalviewjsSyncBuildProperties.mustRunAfter jalviewjsSyncTransferSiteJs
+
+
+task jalviewjsPrepareSite {
+ group "JalviewJS"
+ description "Prepares the website folder including unzipping files and copying resources"
+ dependsOn jalviewjsSyncAllLibs
+ dependsOn jalviewjsSyncResources
+ dependsOn jalviewjsSyncSiteResources
+ dependsOn jalviewjsSyncBuildProperties
+ dependsOn jalviewjsSyncCore
+}
+
+
+task jalviewjsBuildSite {
+ group "JalviewJS"
+ description "Builds the whole website including transpiled code"
+ dependsOn jalviewjsCopyTransferSiteJs
+ dependsOn jalviewjsPrepareSite
+}
+
+
+task cleanJalviewjsTransferSite {
+ doFirst {
+ delete "${jalviewDir}/${jalviewjsTransferSiteJsDir}"
+ delete "${jalviewDir}/${jalviewjsTransferSiteLibDir}"
+ delete "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}"
+ delete "${jalviewDir}/${jalviewjsTransferSiteCoreDir}"
+ }
+}
+
+
+task cleanJalviewjsSite {
+ dependsOn cleanJalviewjsTransferSite
+ doFirst {
+ delete "${jalviewDir}/${jalviewjsSiteDir}"
+ }
+}
+
+
+task jalviewjsSiteTar(type: Tar) {
+ group "JalviewJS"
+ description "Creates a tar.gz file for the website"
+ dependsOn jalviewjsBuildSite
+ def outputFilename = "jalviewjs-site-${JALVIEW_VERSION}.tar.gz"
+ try {
+ archiveFileName = outputFilename
+ } catch (Exception e) {
+ archiveName = outputFilename
+ }
+
+ compression Compression.GZIP
+
+ from "${jalviewDir}/${jalviewjsSiteDir}"
+ into jalviewjs_site_dir // this is inside the tar file
+
+ inputs.dir("${jalviewDir}/${jalviewjsSiteDir}")
+}
+
+
+task jalviewjsServer {
+ group "JalviewJS"
+ def filename = "jalviewjsTest.html"
+ description "Starts a webserver on localhost to test the website. See ${filename} to access local site on most recently used port."
+ def htmlFile = "${jalviewDirAbsolutePath}/${filename}"
+ doLast {
+
+ SimpleHttpFileServerFactory factory = new SimpleHttpFileServerFactory()
+ def port = Integer.valueOf(jalviewjs_server_port)
+ def start = port
+ def running = false
+ def url
+ def jalviewjsServer
+ while(port < start+1000 && !running) {
+ try {
+ def doc_root = new File("${jalviewDirAbsolutePath}/${jalviewjsSiteDir}")
+ jalviewjsServer = factory.start(doc_root, port)
+ running = true
+ url = jalviewjsServer.getResourceUrl(jalviewjs_server_resource)
+ println("SERVER STARTED with document root ${doc_root}.")
+ println("Go to "+url+" . Run gradle --stop to stop (kills all gradle daemons).")
+ println("For debug: "+url+"?j2sdebug")
+ println("For verbose: "+url+"?j2sverbose")
+ } catch (Exception e) {
+ port++;
+ }
+ }
+ def htmlText = """
+ <p><a href="${url}">JalviewJS Test. <${url}></a></p>
+ <p><a href="${url}?j2sdebug">JalviewJS Test with debug. <${url}?j2sdebug></a></p>
+ <p><a href="${url}?j2sverbose">JalviewJS Test with verbose. <${url}?j2sdebug></a></p>
+ """
+ jalviewjsCoreClasslists.each { cl ->
+ def urlcore = jalviewjsServer.getResourceUrl(file(cl.outputfile).getName())
+ htmlText += """
+ <p><a href="${urlcore}">${jalviewjsJalviewTemplateName} [core ${cl.name}]. <${urlcore}></a></p>
+ """
+ println("For core ${cl.name}: "+urlcore)
+ }
+
+ file(htmlFile).text = htmlText
+ }
+
+ outputs.file(htmlFile)
+ outputs.upToDateWhen({false})
+}
+
+
+task cleanJalviewjsAll {
+ group "JalviewJS"
+ description "Delete all configuration and build artifacts to do with JalviewJS build"
+ dependsOn cleanJalviewjsSite
+ dependsOn jalviewjsEclipsePaths
+
+ doFirst {
+ delete "${jalviewDir}/${jalviewjsBuildDir}"
+ delete "${jalviewDir}/${eclipse_bin_dir}"
+ if (eclipseWorkspace != null && file(eclipseWorkspace.getAbsolutePath()+"/.metadata").exists()) {
+ delete file(eclipseWorkspace.getAbsolutePath()+"/.metadata")
+ }
+ delete "${jalviewDir}/${jalviewjs_j2s_settings}"
+ }
+
+ outputs.upToDateWhen( { false } )
+}
+
+
+task jalviewjsIDE_checkJ2sPlugin {
+ group "00 JalviewJS in Eclipse"
+ description "Compare the swingjs/net.sf.j2s.core(-j11)?.jar file with the Eclipse IDE's plugin version (found in the 'dropins' dir)"
+
+ doFirst {
+ def j2sPlugin = string("${jalviewDir}/${jalviewjsJ2sPlugin}")
+ def j2sPluginFile = file(j2sPlugin)
+ def eclipseHome = System.properties["eclipse.home.location"]
+ if (eclipseHome == null || ! IN_ECLIPSE) {
+ throw new StopExecutionException("Cannot find running Eclipse home from System.properties['eclipse.home.location']. Skipping J2S Plugin Check.")
+ }
+ def eclipseJ2sPlugin = "${eclipseHome}/dropins/${j2sPluginFile.getName()}"
+ def eclipseJ2sPluginFile = file(eclipseJ2sPlugin)
+ if (!eclipseJ2sPluginFile.exists()) {
+ def msg = "Eclipse J2S Plugin is not installed (could not find '${eclipseJ2sPlugin}')\nTry running task jalviewjsIDE_copyJ2sPlugin"
+ System.err.println(msg)
+ throw new StopExecutionException(msg)
+ }
+
+ def digest = MessageDigest.getInstance("MD5")
+
+ digest.update(j2sPluginFile.text.bytes)
+ def j2sPluginMd5 = new BigInteger(1, digest.digest()).toString(16).padLeft(32, '0')
+
+ digest.update(eclipseJ2sPluginFile.text.bytes)
+ def eclipseJ2sPluginMd5 = new BigInteger(1, digest.digest()).toString(16).padLeft(32, '0')
+
+ if (j2sPluginMd5 != eclipseJ2sPluginMd5) {
+ def msg = "WARNING! Eclipse J2S Plugin '${eclipseJ2sPlugin}' is different to this commit's version '${j2sPlugin}'"
+ System.err.println(msg)
+ throw new StopExecutionException(msg)
+ } else {
+ def msg = "Eclipse J2S Plugin is the same as '${j2sPlugin}' (this is good)"
+ println(msg)
+ }
+ }
+}
+
+task jalviewjsIDE_copyJ2sPlugin {
+ group "00 JalviewJS in Eclipse"
+ description "Copy the swingjs/net.sf.j2s.core(-j11)?.jar file into the Eclipse IDE's 'dropins' dir"
+
+ doFirst {
+ def j2sPlugin = string("${jalviewDir}/${jalviewjsJ2sPlugin}")
+ def j2sPluginFile = file(j2sPlugin)
+ def eclipseHome = System.properties["eclipse.home.location"]
+ if (eclipseHome == null || ! IN_ECLIPSE) {
+ throw new StopExecutionException("Cannot find running Eclipse home from System.properties['eclipse.home.location']. NOT copying J2S Plugin.")
+ }
+ def eclipseJ2sPlugin = "${eclipseHome}/dropins/${j2sPluginFile.getName()}"
+ def eclipseJ2sPluginFile = file(eclipseJ2sPlugin)
+ def msg = "WARNING! Copying this commit's j2s plugin '${j2sPlugin}' to Eclipse J2S Plugin '${eclipseJ2sPlugin}'\n* May require an Eclipse restart"
+ System.err.println(msg)
+ copy {
+ from j2sPlugin
+ eclipseJ2sPluginFile.getParentFile().mkdirs()
+ into eclipseJ2sPluginFile.getParent()
+ }
+ }
+}
+
+
+task jalviewjsIDE_j2sFile {
+ group "00 JalviewJS in Eclipse"
+ description "Creates the .j2s file"
+ dependsOn jalviewjsCreateJ2sSettings
+}
+
+
+task jalviewjsIDE_SyncCore {
+ group "00 JalviewJS in Eclipse"
+ description "Build the core js lib closures listed in the classlists dir and publish core html from template"
+ dependsOn jalviewjsSyncCore
+}
+
+
+task jalviewjsIDE_SyncSiteAll {
+ dependsOn jalviewjsSyncAllLibs
+ dependsOn jalviewjsSyncResources
+ dependsOn jalviewjsSyncSiteResources
+ dependsOn jalviewjsSyncBuildProperties
+}
+
+
+cleanJalviewjsTransferSite.mustRunAfter jalviewjsIDE_SyncSiteAll
+
+
+task jalviewjsIDE_PrepareSite {
+ group "00 JalviewJS in Eclipse"
+ description "Sync libs and resources to site dir, but not closure cores"
+
+ dependsOn jalviewjsIDE_SyncSiteAll
+ dependsOn cleanJalviewjsTransferSite
+}
+
+
+task jalviewjsIDE_AssembleSite {
+ group "00 JalviewJS in Eclipse"
+ description "Assembles unzipped supporting zipfiles, resources, site resources and closure cores into the Eclipse transpiled site"
+ dependsOn jalviewjsPrepareSite
+}
+
+
+task jalviewjsIDE_SiteClean {
+ group "00 JalviewJS in Eclipse"
+ description "Deletes the Eclipse transpiled site"
+ dependsOn cleanJalviewjsSite
+}
+
+
+task jalviewjsIDE_Server {
+ group "00 JalviewJS in Eclipse"
+ description "Starts a webserver on localhost to test the website"
+ dependsOn jalviewjsServer
+}
+
+
+// buildship runs this at import or gradle refresh
+task eclipseSynchronizationTask {
+ //dependsOn eclipseSetup
+ dependsOn createBuildProperties
+ if (J2S_ENABLED) {
+ dependsOn jalviewjsIDE_j2sFile
+ dependsOn jalviewjsIDE_checkJ2sPlugin
+ dependsOn jalviewjsIDE_PrepareSite
+ }
+}
+
+
+// buildship runs this at build time or project refresh
+task eclipseAutoBuildTask {
+ //dependsOn jalviewjsIDE_checkJ2sPlugin
+ //dependsOn jalviewjsIDE_PrepareSite
+}
+
+
+
+
+
+
+
+
+task jalviewjs {
+ group "JalviewJS"
+ description "Build the site"
+ dependsOn jalviewjsBuildSite
+}
git://source.jalview.org / jalview.git / blobdiff