import org.apache.tools.ant.filters.ReplaceTokens
-//import org.apache.tools.ant.filters.ReplaceRegexp
import org.gradle.internal.os.OperatingSystem
-import org.gradle.plugins.ide.eclipse.model.*
-
+import org.gradle.plugins.ide.eclipse.model.Output
+import org.gradle.plugins.ide.eclipse.model.Library
import groovy.transform.ExternalizeMethods
buildscript {
dependencies {
classpath 'org.openclover:clover:4.3.1'
- classpath 'org.apache.commons:commons-compress:1.18'
}
}
}
}
+dependencies {
+ compile 'org.apache.commons:commons-compress:1.18'
+}
+
mainClassName = launcherClass
def cloverInstrDir = file("$buildDir/$cloverSourcesInstrDir")
def classes = "$jalviewDir/$classesDir"
case "BUILD":
// TODO: get bamboo build artifact URL for getdown artifacts
+ getdown_channel_base = bamboo_channelbase
+ getdown_channel_name = bamboo_planKey + '/'+JAVA_VERSION
+ getdown_app_base = bamboo_channelbase + '/'+ bamboo_planKey + bamboo_getdown_channel_suffix + '/'+JAVA_VERSION
getdown_app_dir = getdown_app_dir_alt
buildProperties = jalviewDir + "/" + classesDir +"/" + buildPropertiesFile
break
*/
gitHash = ""
gitBranch = ""
+
}
def JAVA_INTEGER_VERSION
runtimeClasspath = compileClasspath
}
+
clover {
java {
srcDirs = [ cloverInstrDir ]
compileClasspath += files(sourceSets.main.java.outputDir)
}
- compileClasspath += fileTree(dir: "$jalviewDir/$utilsDir", include: ["**/*.jar"])
compileClasspath += fileTree(dir: "$jalviewDir/$libDir", include: ["*.jar"])
+ compileClasspath += fileTree(dir: "$jalviewDir/$utilsDir/testnglibs", include: ["**/*.jar"])
+ compileClasspath += fileTree(dir: "$jalviewDir/$utilsDir/testlibs", include: ["**/*.jar"])
runtimeClasspath = compileClasspath
}
eclipse {
project {
- name = "Jalview with gradle build"
+ name = eclipse_project_name
natures 'org.eclipse.jdt.core.javanature',
'org.eclipse.jdt.groovy.core.groovyNature',
classpath {
//defaultOutputDir = sourceSets.main.java.outputDir
def removeThese = []
- configurations.each{ if (it.isCanBeResolved()) {
- removeThese += it
- }
- }
-
- minusConfigurations += removeThese
- plusConfigurations = [ ]
- file {
-
- whenMerged { cp ->
- def removeTheseToo = []
- HashMap<String, Boolean> addedSrcPath = new HashMap<>();
- cp.entries.each { entry ->
- if (entry.kind == 'src') {
- if (addedSrcPath.getAt(entry.path) || !(entry.path == "src" || entry.path == "test")) {
- removeTheseToo += entry
- } else {
- addedSrcPath.putAt(entry.path, true)
- }
- }
+ configurations.each{
+ if (it.isCanBeResolved()) {
+ removeThese += it
}
- cp.entries.removeAll(removeTheseToo)
-
- print ("CP="+cp.inspect())
-
- cp.entries += new Output("bin/main")
- cp.entries += new Library(fileReference(helpParentDir))
- cp.entries += new Library(fileReference(resourceDir))
+ }
- HashMap<String, Boolean> addedLibPath = new HashMap<>();
+ minusConfigurations += removeThese
+ plusConfigurations = [ ]
+ file {
- // changing from sourcesets.main.classpath to specific Java version lib
- //sourceSets.main.compileClasspath.each{
- fileTree("$jalviewDir/$libDistDir").include("**/*.jar").include("*.jar").each {
- //don't want to add outputDir as eclipse is using its own output dir in bin/main
- if (it.isDirectory() || ! it.exists()) {
- // don't add dirs to classpath
- return
- }
- def itPath = it.toString()
- if (itPath.startsWith(jalviewDirAbsolutePath+"/")) {
- itPath = itPath.substring(jalviewDirAbsolutePath.length()+1)
- }
- if (addedLibPath.get(itPath)) {
- //println("Not adding duplicate entry "+itPath)
- } else {
- //println("Adding entry "+itPath)
- cp.entries += new Library(fileReference(itPath))
- addedLibPath.put(itPath, true)
+ whenMerged { cp ->
+ def removeTheseToo = []
+ HashMap<String, Boolean> alreadyAddedSrcPath = new HashMap<>();
+ cp.entries.each { entry ->
+ if (entry.kind == 'src') {
+ if (alreadyAddedSrcPath.getAt(entry.path) || !(entry.path == "src" || entry.path == "test")) {
+ removeTheseToo += entry
+ } else {
+ alreadyAddedSrcPath.putAt(entry.path, true)
+ }
+ }
}
- }
+ cp.entries.removeAll(removeTheseToo)
- // changing from sourcesets.main.classpath to specific Java version lib
- //sourceSets.test.compileClasspath.each{
- fileTree(dir: "$jalviewDir/$utilsDir", include: ["**/*.jar"]).each {
- //if ((it.isDirectory() || ! it.exists()) && ! (it.equals(sourceSets.main.java.outputDir))) {
- //no longer want to add outputDir as eclipse is using its own output dir in bin/main
- if (it.isDirectory() || ! it.exists()) {
- // don't add dirs to classpath
- return false // groovy "break" in .each loop
+ if (file(eclipse_bin_dir+"/main").isDirectory()) {
+ cp.entries += new Output(eclipse_bin_dir+"/main")
}
- def itPath = it.toString()
- if (itPath.startsWith(jalviewDirAbsolutePath+"/")) {
- itPath = itPath.substring(jalviewDirAbsolutePath.length()+1)
- }
- if (addedLibPath.get(itPath)) {
- // don't duplicate
- } else {
- def lib = new Library(fileReference(itPath))
- // this doesn't work... yet. Adding test=true attribute using withXml below
- //def attrs = new Node(null, 'attributes', ["test":"true"])
- //lib.appendNode(attrs) //
- cp.entries += lib
- addedLibPath.put(itPath, true)
+ if (file(helpParentDir).isDirectory()) {
+ cp.entries += new Library(fileReference(helpParentDir))
}
+ if (file(resourceDir).isDirectory()) {
+ cp.entries += new Library(fileReference(resourceDir))
}
- }
- // withXml changes ignored by buildship, these add the "test=true" attribute
- withXml {
- def node = it.asNode()
+ HashMap<String, Boolean> alreadyAddedLibPath = new HashMap<>();
- def srcTestAttributes
- node.children().each{ cpe ->
- def attributes = cpe.attributes()
- if (attributes.get("kind") == "src" && attributes.get("path") == "test") {
- srcTestAttributes = cpe.find { a -> a.name() == "attributes" }
+ sourceSets.main.compileClasspath.findAll { it.name.endsWith(".jar") }.each {
+ //don't want to add outputDir as eclipse is using its own output dir in bin/main
+ if (it.isDirectory() || ! it.exists()) {
+ // don't add dirs to classpath
return
}
- }
- def addTestAttribute = true
- srcTestAttributes.each{a ->
- if (a.name() == "attribute" && a.attributes().getAt("name") == "test") {
- addTestAttribute = false
+ def itPath = it.toString()
+ if (itPath.startsWith(jalviewDirAbsolutePath+"/")) {
+ // make relative path
+ itPath = itPath.substring(jalviewDirAbsolutePath.length()+1)
+ }
+ if (alreadyAddedLibPath.get(itPath)) {
+ //println("Not adding duplicate entry "+itPath)
+ } else {
+ //println("Adding entry "+itPath)
+ cp.entries += new Library(fileReference(itPath))
+ alreadyAddedLibPath.put(itPath, true)
}
- }
- if (addTestAttribute) {
- srcTestAttributes.append(new Node(null, "attribute", [name:"test", value:"true"]))
}
- node.children().each{ cpe ->
- def attributes = cpe.attributes()
- if (attributes.get("kind") == "lib" && attributes.get("path").startsWith("utils/")) {
- cpe.appendNode('attributes')
- .appendNode('attribute', [name:"test", value:"true"])
+ //fileTree(dir: "$jalviewDir/$utilsDir", include: ["test*/*.jar"]).each {
+ sourceSets.test.compileClasspath.findAll { it.name.endsWith(".jar") }.each {
+ //no longer want to add outputDir as eclipse is using its own output dir in bin/main
+ if (it.isDirectory() || ! it.exists()) {
+ // don't add dirs to classpath
+ return false // groovy "break" in .each closure
+ }
+ def itPath = it.toString()
+ if (itPath.startsWith(jalviewDirAbsolutePath+"/")) {
+ itPath = itPath.substring(jalviewDirAbsolutePath.length()+1)
+ }
+ if (alreadyAddedLibPath.get(itPath)) {
+ // don't duplicate
+ } else {
+ def lib = new Library(fileReference(itPath))
+ lib.entryAttributes["test"] = "true"
+ cp.entries += lib
+ alreadyAddedLibPath.put(itPath, true)
}
}
- } // withXML
+
+ } // whenMerged
+
} // file
containers 'org.eclipse.buildship.core.gradleclasspathcontainer'
+
} // classpath
jdt {
targetCompatibility = compile_target_compatibility
javaRuntimeName = eclipse_java_runtime_name
+ // add in jalview project specific properties/preferences into eclipse core preferences
file {
withProperties { props ->
def jalview_prefs = new Properties()
}
}
}
- }
- //synchronizationTasks eclipseClasspath
- //autoBuildTasks eclipseClasspath
+ } // jdt
+
}
task cloverInstr() {
task sourceDist (type: Tar) {
def VERSION_UNDERSCORES = JALVIEW_VERSION.replaceAll("\\.", "_")
- archiveFileName = project.name + "_" + VERSION_UNDERSCORES + ".tar.gz"
+ def outputFileName = project.name + "_" + VERSION_UNDERSCORES + ".tar.gz"
+ // cater for buildship < 3.1 [3.0.1 is max version in eclipse 2018-09]
+ try {
+ archiveFileName = outputFileName
+ } catch (Exception e) {
+ archiveName = outputFileName
+ }
compression Compression.GZIP
"LICENSE",
"**/README",
"RELEASE",
- "THIRDPARTYLIBS","TESTNG","**/README",
+ "THIRDPARTYLIBS","TESTNG",
"build.gradle",
"gradle.properties",
"**/*.java",
// exluding these as not using jars as modules yet
exclude ("$j11modDir/**/*.jar")
}
- from (jalviewDir) {
- // explicit includes for stuff that seemed to not get included
- include(fileTree("test/**/*"))
- exclude(EXCLUDE_FILES)
- }
+// from (jalviewDir) {
+// // explicit includes for stuff that seemed to not get included
+// include(fileTree("test/**/*."))
+// exclude(EXCLUDE_FILES)
+// exclude(PROCESS_FILES)
+// }
}
task helppages {
inputs.dir("$classes/$helpDir")
outputs.dir("$helpOutputDir")
}
+
+def jalviewjsBuildDir
+def jalviewjsSiteDir
+def jalviewjsTransferSiteDir
+task jalviewjsSitePath {
+ def relativeBuildDir = file(jalviewDirAbsolutePath).toPath().relativize(buildDir.toPath())
+ jalviewjsBuildDir = "${relativeBuildDir}/jalviewjs"
+ if (jalviewjs_site_dir.startsWith("/")) {
+ jalviewjsSiteDir = jalviewjs_site_dir
+ } else {
+ jalviewjsSiteDir = jalviewjsBuildDir + "/" + jalviewjs_site_dir
+ }
+ jalviewjsTransferSiteDir = jalviewjsBuildDir + "/tmp/site"
+}
+
+def eclipseWorkspace
+task jalviewjsSetEclipseWorkspace {
+ def propKey = "jalviewjs_eclipse_workspace"
+ def propsFileName = "${jalviewjsBuildDir}/${jalviewjs_eclipse_workspace_location_file}"
+ def props = new Properties()
+ def eclipseWsDir
+ def propVal = null
+ if (project.hasProperty(propKey)) {
+ propVal = project.getProperty(propKey)
+ eclipseWsDir = propVal
+ }
+ if (( eclipseWsDir == null || !file(eclipseWsDir).exists() ) && file(propsFileName).exists()) {
+ def ins = new FileInputStream("${jalviewDirAbsolutePath}/${propsFileName}")
+ props.load(ins)
+ ins.close()
+ if (props.getProperty(propKey, null) != null) {
+ eclipseWsDir = props.getProperty(propKey)
+ }
+ }
+
+ if (eclipseWsDir == null || !file(eclipseWsDir).exists()) {
+ def tempDir = File.createTempDir()
+ eclipseWsDir = tempDir.getAbsolutePath()
+ props.setProperty(propKey, eclipseWsDir)
+ def propsFile = file(propsFileName)
+ propsFile.parentFile.mkdirs()
+ propsFile.createNewFile() // doesn't affect existing file
+ def outs = new FileOutputStream(propsFile, false)
+ props.store(outs, null)
+ outs.close()
+ }
+
+ eclipseWorkspace = file(eclipseWsDir)
+
+ println("ECLIPSE WORKSPACE: "+eclipseWorkspace.getPath())
+
+ inputs.property(propKey, propVal)
+ outputs.file(propsFileName)
+}
+
+
+task jalviewjsUnzipFiles {
+ dependsOn jalviewjsSitePath
+
+ def zipFiles = fileTree(dir: jalviewjs_utils_dir+"/"+jalviewjs_libjs_dir).include("*.zip")
+ zipFiles += jalviewjs_utils_dir+"/"+jalviewjs_swingjs_zip
+
+ doLast {
+ zipFiles.each { file_zip ->
+ copy {
+ from zipTree(file_zip)
+ into jalviewjsSiteDir
+ }
+ }
+ }
+
+ inputs.files zipFiles
+ outputs.dir jalviewjsSiteDir
+}
+
+def eclipseDropinsDir
+def eclipseBinary
+def eclipseVersion
+def fromDropinsDir
+task jalviewjsEclipsePaths {
+ def eclipseRoot
+ def eclipseProduct
+ eclipseRoot = jalviewjs_eclipse_root
+ if (eclipseRoot.startsWith("~")) {
+ eclipseRoot = System.getProperty("user.home") + eclipseRoot.substring(1)
+ }
+ if (OperatingSystem.current().isMacOsX()) {
+ eclipseRoot += "/Eclipse.app"
+ eclipseDropinsDir = eclipseRoot+"/Contents/Eclipse/dropins"
+ eclipseBinary = eclipseRoot+"/Contents/MacOS/eclipse"
+ eclipseProduct = eclipseRoot+"/Contents/Eclipse/.eclipseproduct"
+ } else if (OperatingSystem.current().isWindows()) { // check these paths!!
+ if (file(eclipseRoot+"/eclipse").isDirectory() && file(eclipseRoot+"/eclipse/.eclipseproduct").exists()) {
+ eclipseRoot += "/eclipse"
+ }
+ eclipseDropinsDir = eclipseRoot+"/dropins"
+ eclipseBinary = eclipseRoot+"/eclipse"
+ eclipseProduct = eclipseRoot+"/.eclipseproduct"
+ } else { // linux or unix
+ if (file(eclipseRoot+"/eclipse").isDirectory() && file(eclipseRoot+"/eclipse/.eclipseproduct").exists()) {
+ eclipseRoot += "/eclipse"
+ }
+ eclipseDropinsDir = eclipseRoot+"/dropins"
+ eclipseBinary = eclipseRoot+"/eclipse"
+ eclipseProduct = eclipseRoot+"/.eclipseproduct"
+ }
+
+ def fis = new FileInputStream(eclipseProduct)
+ def props = new Properties()
+ props.load(fis)
+ eclipseVersion = props.getProperty("version")
+ fis.close()
+ println("ECLIPSE_VERSION=${eclipseVersion}")
+ String[] v = eclipseVersion.split("\\.")
+ def v0 = Integer.valueOf(v[0])
+ def v1 = Integer.valueOf(v[1])
+ if (v0 < 4 || ( v0 == 4 && v1 < 13 )) {
+ fromDropinsDir = "eclipse/dropins_4.12"
+ } else {
+ fromDropinsDir = "eclipse/dropins_4.13"
+ }
+}
+
+task jalviewjsEclipseCopyDropins {
+ dependsOn jalviewjsEclipsePaths
+ def inputFiles = fileTree(dir: jalviewjs_utils_dir+"/"+fromDropinsDir, include: "*.jar")
+ def outputDir = eclipseDropinsDir
+
+ inputs.files inputFiles
+ inputFiles.each { file ->
+ outputs.file(outputDir+"/"+file.name)
+ }
+
+ doLast {
+ def outputFiles = []
+ inputFiles.each { file ->
+ copy {
+ from file
+ into outputDir
+ }
+ }
+ }
+}
+
+task jalviewjsCreateJ2sSettings(type: WriteProperties) {
+ dependsOn jalviewjsSitePath
+ outputFile (jalviewDir+"/"+jalviewjs_j2s_settings)
+ def props = project.properties.sort { it.key }
+ def siteDirProperty = "j2s.site.directory"
+ def setSiteDir = false
+ props.each { prop, val ->
+ if (prop.startsWith("j2s.") && val != null) {
+ if (prop == siteDirProperty) {
+ if (!(val.startsWith("/") || val.startsWith("file://") )) {
+ val = jalviewjsTransferSiteDir+"/"+val
+ }
+ setSiteDir = true
+ }
+ property(prop,val)
+ }
+ if (!setSiteDir) {
+ property(siteDirProperty,jalviewjsTransferSiteDir)
+ }
+ }
+ outputs.file(outputFile)
+}
+
+task jalviewjsEclipseSetup {
+ dependsOn jalviewjsEclipseCopyDropins
+ dependsOn jalviewjsSetEclipseWorkspace
+ dependsOn jalviewjsCreateJ2sSettings
+}
+
+task jalviewjsCopyResources (type: Copy) {
+ dependsOn jalviewjsSitePath
+ def inputFiles = fileTree(dir: jalviewjs_resource_dir)
+ def outputDir = jalviewjsSiteDir+"/"+jalviewjs_j2s_subdir
+
+ from inputFiles
+ into outputDir
+ def outputFiles = []
+ rename { filename ->
+ outputFiles += outputDir+"/"+filename
+ null
+ }
+ outputs.files outputFiles
+ inputs.files inputFiles
+}
+
+task jalviewjsCopySiteResources (type: Copy) {
+ dependsOn jalviewjsSitePath
+ def inputFiles = fileTree(dir: jalviewjs_utils_dir+"/"+jalviewjs_site_resource_dir)
+ def outputDir = jalviewjsSiteDir
+
+ from inputFiles
+ into outputDir
+ def outputFiles = []
+ rename { filename ->
+ outputFiles += outputDir+"/"+filename
+ null
+ }
+ outputs.files outputFiles
+ inputs.files inputFiles
+}
+
+task jalviewjsTotalClean {
+ group "JalviewJS"
+ description "Delete everything to do with JalviewJS build"
+ //delete jalviewjsBuildDir
+ delete jalviewDir+"/"+eclipse_bin_dir
+ delete file(eclipseWorkspace.getAbsolutePath()+"/.metadata")
+ delete jalviewDir+"/"+jalviewjs_j2s_settings
+}
+
+task jalviewjsProjectImport(type: Exec) {
+ // work out how to do this!
+ dependsOn eclipseProject
+ dependsOn eclipseClasspath
+ dependsOn eclipseJdt
+ dependsOn jalviewjsEclipsePaths
+ dependsOn jalviewjsEclipseSetup
+ executable(eclipseBinary)
+ args(["-nosplash", "--launcher.suppressErrors", "-application", "com.seeq.eclipse.importprojects.headlessimport", "-data", eclipseWorkspace.getPath(), "-import", jalviewDirAbsolutePath])
+
+ def projdir = eclipseWorkspace.getPath()+"/.metadata/.plugins/org.eclipse.core.resources/.projects/jalview/org.eclipse.jdt.core"
+ inputs.file(jalviewDir+"/.project")
+ outputs.dir(projdir)
+ outputs.upToDateWhen { file(projdir).exists() }
+}
+
+task jalviewjsTranspile(type: Exec) {
+ dependsOn jalviewjsEclipseSetup
+ dependsOn jalviewjsProjectImport
+ dependsOn jalviewjsEclipsePaths
+ executable(eclipseBinary)
+ args(["-nosplash", "--launcher.suppressErrors", "-application", "org.eclipse.jdt.apt.core.aptBuild", "-data", eclipseWorkspace, "-"+jalviewjs_eclipseBuildArg, eclipse_project_name ])
+
+ def stdout
+ def stderr
+ doFirst {
+ stdout = new ByteArrayOutputStream()
+ stderr = new ByteArrayOutputStream()
+
+ def logOutFileName = "${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_j2s_stdout}"
+ def logOutFile = file(logOutFileName)
+ logOutFile.createNewFile()
+ def logOutFOS = new FileOutputStream(logOutFile, false)
+ //def logErrFileName = "${jalviewjsBuildDir}/${jalviewjs_j2s_stderr}"
+ //def logErrFile = file(logFileName)
+ //logErrFile.createNewFile()
+ //def logErrFOS = new FileErrputStream(logErrFile, false)
+ // combine stdout and stderr
+ def logErrFOS = logOutFOS
+ if (jalviewjs_j2s_to_console.equals("true")) {
+ standardOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ new org.apache.tools.ant.util.TeeOutputStream(
+ logOutFOS,
+ stdout),
+ standardOutput)
+ errorOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ new org.apache.tools.ant.util.TeeOutputStream(
+ logErrFOS,
+ stderr),
+ errorOutput)
+ } else {
+ standardOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ logOutFOS,
+ stdout)
+ errorOutput = new org.apache.tools.ant.util.TeeOutputStream(
+ logErrFOS,
+ stderr)
+ }
+ }
+ doLast {
+ if (stdout.toString().contains("Error processing ")) {
+ // j2s did not complete transpile
+ throw new GradleException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewjsBuildDir}/${jalviewjs_j2s_stdout}'")
+ }
+ }
+
+ inputs.dir(sourceDir)
+ outputs.dir(eclipse_bin_dir+"/main")
+ outputs.dir(jalviewjsTransferSiteDir)
+
+}
+
+task jalviewjsCopyTransferSite(type: Copy) {
+ dependsOn jalviewjsTranspile
+ from jalviewjsTransferSiteDir
+ into jalviewjsSiteDir
+}
+
+jalviewjsUnzipFiles.mustRunAfter jalviewjsCopyTransferSite
+jalviewjsCopyResources.mustRunAfter jalviewjsCopyTransferSite
+jalviewjsCopySiteResources.mustRunAfter jalviewjsCopyTransferSite
+
+task jalviewjsPrepareSite {
+ group "JalviewJS"
+ description "Prepares the website folder including unzipping files and copying resources"
+ dependsOn jalviewjsSitePath
+ dependsOn jalviewjsUnzipFiles
+ dependsOn jalviewjsCopyResources
+ dependsOn jalviewjsCopySiteResources
+}
+
+task jalviewjsBuildSite {
+ group "JalviewJS"
+ description "Builds the whole website including transpiled code"
+ dependsOn jalviewjsCopyTransferSite
+ dependsOn jalviewjsPrepareSite
+}
+
+task jalviewjsSiteClean {
+ //delete jalviewjsTransferSiteDir
+ //delete jalviewjsSiteDir
+}
+
+task jalviewjsSiteTar(type: Tar) {
+ group "JalviewJS"
+ description "Creates a tar.gz file for the website"
+ dependsOn jalviewjsBuildSite
+ def outputFilename = "jalviewjs-site-${JALVIEW_VERSION}.tar.gz"
+ try {
+ archiveFileName = outputFilename
+ } catch (Exception e) {
+ archiveName = outputFilename
+ }
+
+ compression Compression.GZIP
+
+ from jalviewjsSiteDir
+ into jalviewjs_site_dir // this is inside the tar file
+
+ inputs.dir(jalviewjsSiteDir)
+}
+
+task jalviewjsServer {
+ group "JalviewJS"
+ description "Starts a webserver on localhost to test the website"
+ dependsOn jalviewjsSitePath
+ def htmlFile = "${jalviewDirAbsolutePath}/jalviewjsTest.html"
+ doLast {
+
+ SimpleHttpFileServerFactory factory = new SimpleHttpFileServerFactory()
+ def port = Integer.valueOf(jalviewjs_server_port)
+ def start = port
+ def running = false
+ def url
+ while(port < start+1000 && !running) {
+ try {
+ def doc_root = new File(jalviewDirAbsolutePath +"/"+ jalviewjsSiteDir)
+ def jalviewjsServer = factory.start(doc_root, port)
+ running = true
+ url = jalviewjsServer.getResourceUrl(jalviewjs_server_resource)
+ println("SERVER STARTED with document root ${doc_root}.")
+ println("Go to "+url+" . Run gradle --stop to stop (kills all gradle daemons).")
+ println("For debug: "+url+"?j2sdebug")
+
+ file(htmlFile).text = """
+ <p><a href="${url}">Jalview JS Test. <${url}></a></p>
+ <p><a href="${url}?j2sdebug">Jalview JS Test with debug. <${url}?j2sdebug<</a></p>
+ """
+
+ } catch (Exception e) {
+ port++;
+ }
+ }
+
+ }
+
+ outputs.file(htmlFile)
+}
+
+task jalviewjs {
+ group "JalviewJS"
+ description "Build the site"
+ dependsOn jalviewjsBuildSite
+}
+
+
+task jalviewjsIDECopyTransferSite(type: Copy) {
+ from jalviewjsTransferSiteDir
+ into jalviewjsSiteDir
+}
+
+task jalviewjsIDEj2s {
+ group "JalviewJS in Eclipse"
+ description "Creates the .j2s file"
+ dependsOn jalviewjsCreateJ2sSettings
+}
+
+task jalviewjsIDEBuildSite {
+ group "JalviewJS in Eclipse"
+ description "Copies the Eclipse transpiled site and unzips supporting zipfiles"
+ dependsOn jalviewjsIDECopyTransferSite
+ dependsOn jalviewjsPrepareSite
+}
+
+task jalviewjsIDESiteClean {
+ group "JalviewJS in Eclipse"
+ description "Deletes the Eclipse transpiled site"
+ dependsOn jalviewjsSiteClean
+}
+
+task jalviewjsIDEServer {
+ group "JalviewJS in Eclipse"
+ description "Starts a webserver on localhost to test the website"
+ dependsOn jalviewjsServer
+}
+