<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
<!-- Don't change anything below here unless you know what you are doing! -->
<!-- Url path for WebStart in JNLP file -->
<property name="WebStartLocation" value="http://www.jalview.org/webstart" />
+ <!-- Webstart Image - looked for in resources/images -->
+ <property name="WebStartImage" value="JalviewLogo_big.png"/>
+ <!-- J2SE version needed for webstart launch -->
+<!-- Anne's version needs 1.7 - should rebuild VARNA to java 1.6 for release -->
+ <property name="j2sev" value="1.7+"/>
<!-- build directory configuration -->
<property name="libDir" value="lib" />
<property name="resourceDir" value="resources" />
<property name="packageDir" value="dist" />
<property name="outputJar" value="jalview.jar" />
<!-- Jalview Applet JMol Jar Dependency -->
- <property name="jmolJar" value="JmolApplet-12.1.13.jar" />
+ <property name="jmolJar" value="JmolApplet-12.2.4.jar" />
+ <property name="varnaJar" value="VARNAv3-9-dev.jar" />
<property name="jalviewLiteJar" value="jalviewApplet.jar" />
<!-- switch to indicate if we should obfuscate jalviewLite -->
<!--<property name="donotobfuscate" value="true"/> -->
<!-- the JmolApplet includes the JmolApplet console and the application javac seems to always try and build all packages
-->
<include name="${jmolJar}" />
+ <include name="${varnaJar}" />
</fileset>
</path>
<include name="*.jar" />
</fileset>
</signjar>
+ <copy todir="${packageDir}">
+ <fileset dir="${resourceDir}/images">
+ <include name="${WebStartImage}"/>
+ </fileset>
+ </copy>
+
<taskdef classpathref="build.classpath" resource="com/roxes/tools/ant/taskdefs.properties" />
<!-- codebase="http://www.jalview.org/jalview/webstart" -->
<homepage href="http://www.jalview.org" />
<description>Jalview Multiple Alignment Editor</description>
<description kind="short">Jalview</description>
- <icon href="logo_big.gif" />
- <offline_allowed />
- <!--
- <association mime-type="application-x/ext-file" extensions="fa"/>
- <association mime-type="application-x/ext-file" extensions="fasta"/>
- <association mime-type="application-x/ext-file" extensions="fastq"/>
- <association mime-type="application-x/ext-file" extensions="blc"/>
- <association mime-type="application-x/ext-file" extensions="msf"/>
- <association mime-type="application-x/ext-file" extensions="pfam"/>
- <association mime-type="application-x/ext-file" extensions="aln"/>
- <association mime-type="application-x/ext-file" extensions="pir"/>
- <association mime-type="application-x/ext-file" extensions="amsa"/>
- -->
+ <icon href="${WebStartImage}" />
+ <offline_allowed/>
</information>
<resources>
- <j2se version="1.5+" initial_heap_size="10M" />
+ <j2se version="${j2sev}" initial_heap_size="10M" />
<fileset dir="${packageDir}">
<include name="jalview.jar" />
</fileset>
<security>
<all_permissions />
</security>
- </jnlp>
- <!-- the rest of these jnlp tasks are copy and pastes of the above but with different Vm args -->
+ </jnlp>
<jnlp toFile="${packageDir}/jalview_1G.jnlp" codebase="${WebStartLocation}">
<information>
<title>Jalview</title>
<homepage href="http://www.jalview.org" />
<description>Jalview Multiple Alignment Editor</description>
<description kind="short">Jalview</description>
- <icon href="logo_big.gif" />
+ <icon href="${WebStartImage}" />
<offline_allowed />
- <!--
- <association mime-type="application-x/ext-file" extensions="fa"/>
- <association mime-type="application-x/ext-file" extensions="fasta"/>
- <association mime-type="application-x/ext-file" extensions="fastq"/>
- <association mime-type="application-x/ext-file" extensions="blc"/>
- <association mime-type="application-x/ext-file" extensions="msf"/>
- <association mime-type="application-x/ext-file" extensions="pfam"/>
- <association mime-type="application-x/ext-file" extensions="aln"/>
- <association mime-type="application-x/ext-file" extensions="pir"/>
- <association mime-type="application-x/ext-file" extensions="amsa"/>
- -->
</information>
<resources>
- <j2se version="1.5+" initial_heap_size="64M" max_heap_size="512M" />
+ <j2se version="${j2sev}" initial_heap_size="128M" max_heap_size="512M" />
<fileset dir="${packageDir}">
<include name="jalview.jar" />
</fileset>
<homepage href="http://www.jalview.org" />
<description>Jalview Multiple Alignment Editor</description>
<description kind="short">Jalview</description>
- <icon href="logo_big.gif" />
+ <icon href="${WebStartImage}" />
<offline_allowed />
- <!--
- <association mime-type="application-x/ext-file" extensions="fa"/>
- <association mime-type="application-x/ext-file" extensions="fasta"/>
- <association mime-type="application-x/ext-file" extensions="fastq"/>
- <association mime-type="application-x/ext-file" extensions="blc"/>
- <association mime-type="application-x/ext-file" extensions="msf"/>
- <association mime-type="application-x/ext-file" extensions="pfam"/>
- <association mime-type="application-x/ext-file" extensions="aln"/>
- <association mime-type="application-x/ext-file" extensions="pir"/>
- <association mime-type="application-x/ext-file" extensions="amsa"/>
- -->
</information>
<resources>
- <j2se version="1.5+" initial_heap_size="256M" max_heap_size="1024M" />
+ <j2se version="${j2sev}" initial_heap_size="256M" max_heap_size="1024M" />
<fileset dir="${packageDir}">
<include name="jalview.jar" />
</fileset>
<all_permissions />
</security>
</jnlp>
-
+ <!-- finally, need to postprocess to add in associations at end of 'information' element
+
+ <xslt in="${packageDir}/jalview_noa_1G.jnlp" out="${packageDir}/jalview_1G.jnlp">
+
+ </xslt>
+
+
+ -->
+ <!--
+ <association mime-type="application-x/ext-file" extensions="fa"/>
+ <association mime-type="application-x/ext-file" extensions="fasta"/>
+ <association mime-type="application-x/ext-file" extensions="fastq"/>
+ <association mime-type="application-x/ext-file" extensions="blc"/>
+ <association mime-type="application-x/ext-file" extensions="msf"/>
+ <association mime-type="application-x/ext-file" extensions="pfam"/>
+ <association mime-type="application-x/ext-file" extensions="aln"/>
+ <association mime-type="application-x/ext-file" extensions="pir"/>
+ <association mime-type="application-x/ext-file" extensions="amsa"/>
+ <association mime-type="application-x/ext-file" extensions="stk"/>
+ <association mime-type="application-x/ext-file" extensions="jar"/>-->
+
</target>
<target name="runenv" depends="init">
<copy todir="${packageDir}/examples">
<fileset dir="examples">
<include name="**/*"/>
+ <include name="javascript/*"/>
+ <include name="jmol/*"/>
</fileset>
<fileset dir=".">
<include name="jalviewApplet.jar"/>