<?xml version="1.0"?>
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
<include name="*.jar"/>
</fileset> -->
</path>
+
<!-- Jalview Version String displayed by application on startup and used to check for updates -->
<property name="JALVIEW_VERSION" value="DEVELOPMENT" />
+
+ <property name="INSTALLATION" value="Source" />
+
<!-- 2.4 (VAMSAS)" -->
<!-- Include debugging information in javac true or false -->
<property name="javac.debug" value="true" />
<!-- switch to exclude associations from generated jnlp files -->
<!-- <property name="nojnlpfileassocs" value="true"/> -->
- <!-- Jalview Web Service Clients - see the comments in 'buildextexcclients' for details -->
+ <!-- Jalview Web Service Clients - see the comments in 'buildextclients' for details -->
<property name="wsdl.File" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/jpred?wsdl" />
<property name="wsdl.Files" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/vamsas?wsdlFiles" />
<property name="wsdl.MsaWS" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS?wsdl" />
<properties file="${outputDir}/.build_properties">
<header>
---Jalview Build Details---
- </header>
+ </header>
<property name="VERSION" value="${JALVIEW_VERSION}" />
+ <property name="INSTALLATION" value="${INSTALLATION}" />
<property name="BUILD_DATE" value="${build.date}" />
</properties>
</target>
<include name="*.jar" />
<include name="*_*.jar" />
<exclude name="jalview.jar" />
+ <exclude name="*jnilib.jar"/>
</fileset>
+ </resources>
+ <resources os="Mac OS X">
<property name="jalview.version" value="${JALVIEW_VERSION}" />
+ <fileset dir="${packageDir}">
+ <include name="*quaqua*.jnilib.jar"/>
+ </fileset>
</resources>
+
<application_desc main_class="jalview.bin.Jalview">
</application_desc>
<security>
<mkdir dir="${outputDir}" />
<javac source="1.5" target="1.5" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}"
classpathref="jalviewlite.deps" includes="jalview/appletgui/**"
- excludes="ext/**,MCview/**,org/**,vamsas/**,jalview/io/**,jalview/ext/paradise/**" />
+ excludes="ext/**,MCview/**,org/**,vamsas/**,jalview/ext/paradise/**" />
</target>
<target name="packageApplet" depends="compileApplet, buildPropertiesFile">
</signjar>
<!-- bizarre bug causes JmolApplet to always get signed, even if excluded from above. so copy explicitly -->
<copy file="appletlib/${jmolJar}" tofile="${packageDir}/examples/u_${jmolJar}" overwrite="true" />
+ <!-- finally, replace any launchApp servlet tags with a version specification -->
+ <replace value="http://www.jalview.org/services/launchApp?version=${JALVIEW_VERSION}"">
+ <replacetoken><![CDATA[http://www.jalview.org/services/launchApp"]]></replacetoken>
+ <fileset dir="${packageDir}/examples">
+ <include name="**/*.html"/>
+ </fileset>
+ </replace>
+ <replace value="http://www.jalview.org/services/launchApp?version=${JALVIEW_VERSION}'">
+ <replacetoken><![CDATA[http://www.jalview.org/services/launchApp']]></replacetoken>
+ <fileset dir="${packageDir}/examples">
+ <include name="**/*.html"/>
+ </fileset>
+ </replace>
+
</target>
<target name="sourcedoc" description="Create jalview source documentation pages" depends="init">
<javadoc destdir="${javadocDir}">