Describe new parameters of Jpred

[jabaws.git] / conf / settings / AAConLimits.xml

diff --git a/conf/settings/AAConLimits.xml b/conf/settings/AAConLimits.xml
index a3e4935..6a3b1c2 100644 (file)
--- a/conf/settings/AAConLimits.xml
+++ b/conf/settings/AAConLimits.xml
@@ -1,13 +1,30 @@
 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
 <limits>\r
- <runnerClassName>compbio.runner.conservation.AACon</runnerClassName>\r
-       <limit isDefault="true">\r
-               <seqNumber>100000</seqNumber>\r
-               <seqLength>100000</seqLength>\r
-       </limit>\r
-       <limit isDefault="false">\r
-               <preset># LocalEngineExecutionLimit #</preset>\r
-               <seqNumber>1000</seqNumber>\r
-               <seqLength>1000</seqLength>\r
-       </limit>\r
+     <runnerClassName>compbio.runner.conservation.AACon</runnerClassName>\r
+    <limit isDefault="true">\r
+        <seqNumber>5000</seqNumber>\r
+        <seqLength>1000</seqLength>\r
+    </limit>\r
+    <limit isDefault="false">\r
+        <preset># LocalEngineExecutionLimit #</preset>\r
+        <seqNumber>200</seqNumber>\r
+        <seqLength>400</seqLength>\r
+    </limit>\r
+\r
+    <!-- Limits for presets    -->\r
+    <limit isDefault="false">\r
+        <preset>Quick conservation</preset>\r
+        <seqNumber>10000</seqNumber>\r
+        <seqLength>10000</seqLength>\r
+    </limit>\r
+    <limit isDefault="false">\r
+        <preset>Slow conservation</preset>\r
+        <seqNumber>2000</seqNumber>\r
+        <seqLength>1000</seqLength>\r
+    </limit>\r
+    <limit isDefault="false">\r
+        <preset>Complete conservation</preset>\r
+        <seqNumber>2000</seqNumber>\r
+        <seqLength>1000</seqLength>\r
+    </limit>\r
 </limits>\r