<?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
<limits>\r
- <runnerClassName>compbio.runner.muscle.Muscle</runnerClassName>\r
- <limit isDefault="true">\r
- <seqNumber>1000</seqNumber>\r
- <seqLength>1000</seqLength>\r
- </limit>\r
- <limit isDefault="false">\r
- <preset># LocalEngineExecutionLimit #</preset>\r
- <seqNumber>20</seqNumber>\r
- <seqLength>500</seqLength>\r
- </limit>\r
- \r
- <!-- Separate limits for presets -->\r
- <limit isDefault="false">\r
- <preset>Protein alignment(Fastest speed)</preset>\r
- <seqNumber>2000</seqNumber>\r
- <seqLength>1000</seqLength>\r
- </limit>\r
- <limit isDefault="false">\r
- <preset>Nucleotide alignment(Fastest speed)</preset>\r
- <seqNumber>1000</seqNumber>\r
- <seqLength>3000</seqLength>\r
- </limit>\r
- <limit isDefault="false">\r
- <preset>Huge alignments (speed-oriented)</preset>\r
- <seqNumber>2000</seqNumber>\r
- <seqLength>3000</seqLength>\r
- </limit>\r
- \r
+ <runnerClassName>compbio.runner.msa.Muscle</runnerClassName>\r
+\r
+ <limit isDefault="true">\r
+ <seqNumber>1000</seqNumber>\r
+ <seqLength>1000</seqLength>\r
+ </limit>\r
+\r
+ <limit isDefault="false">\r
+ <preset># LocalEngineExecutionLimit #</preset>\r
+ <seqNumber>20</seqNumber>\r
+ <seqLength>500</seqLength>\r
+ </limit>\r
+\r
+ <!-- Separate limits for presets -->\r
+ <limit isDefault="false">\r
+ <preset>Protein alignment(Fastest speed)</preset>\r
+ <seqNumber>2000</seqNumber>\r
+ <seqLength>1000</seqLength>\r
+ </limit>\r
+\r
+ <limit isDefault="false">\r
+ <preset>Nucleotide alignment(Fastest speed)</preset>\r
+ <seqNumber>1000</seqNumber>\r
+ <seqLength>3000</seqLength>\r
+ </limit>\r
+\r
+ <limit isDefault="false">\r
+ <preset>Huge alignments (speed-oriented)</preset>\r
+ <seqNumber>2000</seqNumber>\r
+ <seqLength>3000</seqLength>\r
+ </limit>\r
</limits>\r