Add limits for presets from jws2 branch

[jabaws.git] / conf / settings / TcoffeeLimits.xml

diff --git a/conf/settings/TcoffeeLimits.xml b/conf/settings/TcoffeeLimits.xml
index 3416ca3..660d27c 100644 (file)
--- a/conf/settings/TcoffeeLimits.xml
+++ b/conf/settings/TcoffeeLimits.xml
@@ -2,12 +2,21 @@
 <limits>\r
  <runnerClassName>compbio.runner.tcoffee.Tcoffee</runnerClassName>\r
        <limit isDefault="true">\r
-               <seqNumber>1000</seqNumber>\r
-               <seqLength>1000</seqLength>\r
+               <seqNumber>100000</seqNumber>\r
+               <seqLength>100000</seqLength>\r
        </limit>\r
        <limit isDefault="false">\r
                <preset># LocalEngineExecutionLimit #</preset>\r
-               <seqNumber>500</seqNumber>\r
-               <seqLength>1000</seqLength>\r
+               <seqNumber>100000</seqNumber>\r
+               <seqLength>100000</seqLength>\r
+       </limit>\r
+       \r
+       <!-- Uncomment/edit these if you would like to have separate limits for presets -->\r
+       <!-- \r
+       <limit isDefault="false">\r
+               <preset>Quick align. Very fast approximate (Speed-oriented)</preset>\r
+               <seqNumber>1000</seqNumber>\r
+               <seqLength>3000</seqLength>\r
        </limit>\r
+        -->\r
 </limits>\r