import compbio.cassandra.PredictionIndex;
-public class ProteinBean implements PredictionIndex{
+public class ProteinBean implements PredictionIndex {
private String sequence;
private String jnetpred;
private List<String> jobid;
- private LinkedHashMap<String,String> predictions;
- private List<String> subProt; // protein sequence divided by several parts for highlighting the particular part
+ private LinkedHashMap<String, String> predictions;
+ private List<String> subProt; // protein sequence divided by several parts
+ // for highlighting the particular part
private int size;
-
- public ProteinBean (String seq, Map<String,String> pred) {
+
+ public ProteinBean(String seq, Map<String, String> pred) {
this.sequence = seq;
- this.predictions = new LinkedHashMap<String,String>();
+ this.predictions = new LinkedHashMap<String, String>();
this.jobid = new ArrayList<String>();
setPredictions(pred);
}
-
- public void setSequence (String seq) {
+
+ public void setSequence(String seq) {
this.sequence = seq;
}
-
- public void setPredictions(Map<String,String> pred) {
+
+ public void setPredictions(Map<String, String> pred) {
if (predictions == null)
- predictions = new LinkedHashMap<String,String>();
+ predictions = new LinkedHashMap<String, String>();
for (String index : predIndex) {
this.predictions.put(index, pred.get(index));
- }
+ }
this.size = predictions.size();
}
-
- public String getSequence () {
+
+ public String getSequence() {
return sequence;
}
-
- public String getJnetpred () {
+
+ public String getJnetpred() {
return jnetpred;
}
-
- public void setJnetpred (Map<String,String> pred) {
+
+ public void setJnetpred(Map<String, String> pred) {
if (pred != null) {
- if (pred.containsKey("jnetpred"))
+ if (pred.containsKey("jnetpred"))
jnetpred = pred.get("jnetpred");
}
}
-
- public List<String> getJobid () {
+
+ public List<String> getJobid() {
return jobid;
}
-
- public void setJobid (String id) {
+
+ public void setJobid(String id) {
this.jobid.add(id);
}
- public int getSize () {
+ public int getSize() {
return size;
}
-
- public LinkedHashMap<String,String> getPredictions () {
+
+ public LinkedHashMap<String, String> getPredictions() {
return predictions;
}
-
+
public void setSubProt(List<String> subProt) {
this.subProt = subProt;
}