private String parsePredictions(final InputStream stream, String jobid) throws FileNotFoundException {
final FastaReader fr = new FastaReader(stream);
String protein = "";
- alignment = new ArrayList<FastaSequence>();
- predictions = new ArrayList<FastaSequence>();
+// alignment = new ArrayList<FastaSequence>();
+// predictions = new ArrayList<FastaSequence>();
while (fr.hasNext()) {
final FastaSequence fs = fr.next();
String seqid = fs.getId();
}
private int analyseJob(String[] jobinfo) throws IOException {
+ alignment = new ArrayList<FastaSequence>();
+ predictions = new ArrayList<FastaSequence>();
boolean running = true;
boolean ConcisefileExists = false;
boolean LogfileExists = false;