Remove internal FastaReader/FastaSequence and replace this with classes from JABAWS

[proteocache.git] / datadb / compbio / cassandra / JpredParserLocalFile.java

diff --git a/datadb/compbio/cassandra/JpredParserLocalFile.java b/datadb/compbio/cassandra/JpredParserLocalFile.java
index a379d4e..f48178c 100644 (file)
--- a/datadb/compbio/cassandra/JpredParserLocalFile.java
+++ b/datadb/compbio/cassandra/JpredParserLocalFile.java
@@ -15,6 +15,9 @@ import java.util.Calendar;
 import java.util.Date;
 import java.util.List;
 
+import compbio.data.sequence.FastaReader;
+import compbio.data.sequence.FastaSequence;
+
 public class JpredParserLocalFile implements JpredParser {
        private CassandraWriter cw = new CassandraWriter();
        private String dirprefix;
@@ -103,7 +106,7 @@ public class JpredParserLocalFile implements JpredParser {
                                                        } catch (ParseException e) {
                                                                e.printStackTrace();
                                                        }
-                                                       countinsertions += cw.FormQueryTables(insertdate, starttime, finishtime, ip, id, "OK", "OK", newprotein, seqs);
+                                                       //countinsertions += cw.FormQueryTables(insertdate, starttime, finishtime, ip, id, "OK", "OK", newprotein, seqs);
                                                }
                                                fr.close();
                                        } catch (IOException e) {