fix jabaws download link

[jabaws.git] / datamodel / compbio / data / sequence / SequenceUtil.java

diff --git a/datamodel/compbio/data/sequence/SequenceUtil.java b/datamodel/compbio/data/sequence/SequenceUtil.java
index d65494e..6e20988 100644 (file)
--- a/datamodel/compbio/data/sequence/SequenceUtil.java
+++ b/datamodel/compbio/data/sequence/SequenceUtil.java
@@ -1,15 +1,19 @@
-/*\r
- * @(#)SequenceUtil.java 1.0 September 2009 Copyright (c) 2009 Peter Troshin\r
- * Jalview Web Services version: 2.0 This library is free software; you can\r
- * redistribute it and/or modify it under the terms of the Apache License\r
- * version 2 as published by the Apache Software Foundation This library is\r
- * distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;\r
- * without even the implied warranty of MERCHANTABILITY or FITNESS FOR A\r
- * PARTICULAR PURPOSE. See the Apache License for more details. A copy of the\r
- * license is in apache_license.txt. It is also available here: see:\r
- * http://www.apache.org/licenses/LICENSE-2.0.txt Any republication or derived\r
- * work distributed in source code form must include this copyright and license\r
- * notice.\r
+/* Copyright (c) 2011 Peter Troshin\r
+ *  \r
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0     \r
+ * \r
+ *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
+ *  Apache License version 2 as published by the Apache Software Foundation\r
+ * \r
+ *  This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without\r
+ *  even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache \r
+ *  License for more details.\r
+ * \r
+ *  A copy of the license is in apache_license.txt. It is also available here:\r
+ * @see: http://www.apache.org/licenses/LICENSE-2.0.txt\r
+ * \r
+ * Any republication or derived work distributed in source code form\r
+ * must include this copyright and license notice.\r
  */\r
 \r
 package compbio.data.sequence;\r
@@ -286,7 +290,7 @@ public final class SequenceUtil {
         * Read IUPred output\r
         * \r
         * @param result\r
-        * @return\r
+        * @return Map key->sequence name, value->Score\r
         * @throws IOException\r
         * @throws UnknownFileFormatException\r
         */\r
@@ -423,7 +427,7 @@ public final class SequenceUtil {
         * \r
         * @param inStream\r
         *            the InputStream connected to the JRonn output file\r
-        * @return List of {@link AnnotatedSequence} objects\r
+        * @return Map key=sequence name value=Score\r
         * @throws IOException\r
         *             is thrown if the inStream has problems accessing the data\r
         * @throws UnknownFileFormatException\r
@@ -529,7 +533,8 @@ public final class SequenceUtil {
         * \r
         * \r
         * @param input\r
-        * @return\r
+        *            the InputStream\r
+        * @return Map key=sequence name, value=set of score\r
         * @throws IOException\r
         * @throws UnknownFileFormatException\r
         */\r
@@ -651,7 +656,7 @@ public final class SequenceUtil {
         * \r
         * \r
         * @param input\r
-        * @return\r
+        * @return Map key=sequence name, value=set of score\r
         * @throws IOException\r
         * @throws UnknownFileFormatException\r
         */\r