Clean up the code

[proteocache.git] / engine / compbio / engine / JpredJob.java

diff --git a/engine/compbio/engine/JpredJob.java b/engine/compbio/engine/JpredJob.java
index a606746..99981e4 100644 (file)
--- a/engine/compbio/engine/JpredJob.java
+++ b/engine/compbio/engine/JpredJob.java
@@ -3,7 +3,7 @@ package compbio.engine;
 import java.util.ArrayList;
 import java.util.List;
 
-import compbio.cassandra.FastaSequence;
+import compbio.data.sequence.FastaSequence;
 
 public class JpredJob extends Job {
        private String protein;
@@ -17,17 +17,15 @@ public class JpredJob extends Job {
 
        public JpredJob(String jobid, String date1, String date2) {
                super(jobid, date1, date2);
-               this.protein = protein;
                predictions = new ArrayList<FastaSequence>();
-               alignment  = new ArrayList<FastaSequence>();
+               alignment = new ArrayList<FastaSequence>();
                log = "";
        }
 
        public JpredJob(String jobid, String date1, String date2, List<FastaSequence> alignment, List<FastaSequence> predictions) {
                super(jobid, date1, date2);
-               this.protein = protein;
                this.alignment = alignment;
-               this.predictions = predictions; 
+               this.predictions = predictions;
        }
 
        public void setProtein(String protein) {