+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
// run an alignment on the current alignFrame
import jalview.ws.jws2.*;
import jalview.datamodel.*;
} catch (q) {
// currentAlFrame is not defined - so we were run as an interactive script from the Groovy console
// in that case, just pick the first alignmentFrame in the stack.
- msaf = Jalview.getAlignframes()[0]
+ msaf = Jalview.getAlignFrames()[0]
};
// Finally start Jalview's JabaWS MSA Client with the alignment from msaf
new MsaWSClient(service, msaf.getTitle(), msaf.gatherSequencesForAlignment(), false,