import jalview.datamodel.AnnotatedCollectionI
import jalview.datamodel.SequenceI
import jalview.datamodel.SequenceCollectionI
+import jalview.api.AlignViewportI
import jalview.util.Comparison
/*
/*
* to make a new instance for each alignment view
*/
- getInstance: { AnnotatedCollectionI coll, Map<SequenceI, SequenceCollectionI> map -> conserved() },
+ getInstance: { AlignViewportI view, AnnotatedCollectionI coll -> conserved() },
/*
* method only needed if colour scheme has to recalculate