/*
* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
* Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
+ *
* This file is part of Jalview.
- *
+ *
* Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
+ * modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
- *
+ *
* You should have received a copy of the GNU General Public License
* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
import jalview.gui.AlignFrame;
import jalview.gui.AlignViewport;
-def af = Jalview.getAlignFrames();
-def al = af[0].viewport.alignment;
+def al = Jalview.getCurrentAlignFrame().viewport.alignment;
ParseProperties pp = new ParseProperties(al);
-pp.getScoresFromDescription("Score", "ScanPS Raw Score", "([-0-9.+]+)");
+pp.getScoresFromDescription("Score", "ScanPS Raw Score", "([-0-9.+]+)", true);
def sqs = al.getSequenceAt(0);
def annots = sqs.getAnnotation();