-// do something groovy in jalview\r
-print "Hello World.\n";\r
-def alf = Jalview.getAlignframes();\r
-for (ala in alf)\r
-{\r
- // ala is an jalview.gui.AlignFrame object \r
- print ala.getTitle()+"\n";\r
- // get the parent jalview.datamodel.Alignment from the alignment viewport\r
- def alignment = ala.viewport.alignment;\r
- // get the first sequence from the jalview.datamodel.Alignment object\r
- def seq = alignment.getSequenceAt(0); \r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+// do something groovy in jalview
+println "Hello World.\n"
+println "First sequence is " + currentAlFrame.viewport.alignment.getSequenceAt(0).getDisplayId(true)
+
+def alf = Jalview.getAlignFrames()
+for (ala in alf)
+{
+ // ala is an jalview.gui.AlignFrame object
+ println ala.getTitle()
+ // get the parent jalview.datamodel.Alignment from the alignment viewport
+ def alignment = ala.viewport.alignment
+ // get the first sequence from the jalview.datamodel.Alignment object
+ def seq = alignment.getSequenceAt(0)
+}
+Jalview.quit()