*/
- //var currentPage = (readCookie("current_page")) ? readCookie("current_page") : "applets";
+
var currentPage = "applets";
- var signedJars = "jalviewApplet.jar,JmolApplet-12.2.4.jar,java-json.jar,json_simple-1.1.jar";
- var unsignedJars = "u_jalviewApplet.jar,u_JmolApplet-12.2.4.jar,u_java-json.jar,u_json_simple-1.1.jar";
- setOrUpdateCookie('jv_applet_mode', 'false', '1');
- //var isSignedAppletMode = readCookie("jv_applet_mode");
- var appletJars = (isSignedAppletMode === 'true') ? signedJars : unsignedJars;
- //alert(unsigned);
-
function createAppletTag(code, name, archive, width, height, params){
var app = document.createElement('applet');
document.cookie = name + "=" + value + expires + "; path=/";
}
- $(function(){
- //alert("cur page : " + currentPage);
- $('#header').load("includes/header_jv.html");
- $('#content').load(currentPage+".html");
- $('#nav').load("includes/nav_jv.html");
- $('#footer').load("includes/footer_jv.html");
- $('#'+ currentPage).addClass('active-trail active');
+ $(function(){
+ var url = window.location.href;
+ var end = url.length;
+ var start = url.lastIndexOf("#");
+ var newPage = url.substring(start + 1, end);
+ var page = ((start === -1) ? currentPage : newPage);
+ //alert("page:" + page);
+ if(page === "embeddedWJmol"){
+ // do nothing embeddedWJmol page already include
+
+ $('#header').load("includes/header_jv.html");
+ //$('#content').load(page + ".html");
+ $('#nav').load("includes/nav_jv.html");
+ $('#footer').load("includes/footer_jv.html");
+ $('#'+ currentPage).addClass('active-trail active');
+ }else{
+ $('#header').load("includes/header_jv.html");
+ $('#content').load(page + ".html");
+ $('#nav').load("includes/nav_jv.html");
+ $('#footer').load("includes/footer_jv.html");
+ $('#'+ currentPage).addClass('active-trail active');
+
+ var e = document.getElementById("view_decorated");
+ e.style.display = 'none';
+ }
});
- $(document).ready(function(){
- //var currentPage = (readCookie("current_page")) ? readCookie("current_page") : "applets.html";
- //updateLinks(currentPage);
- var params = [["file","uniref50.fa"],
- ["treeFile","ferredoxin.nw"],
- ["userDefinedColour","C=yellow; R,K,H=FF5555; D,E=5555F"],
- ["sortByTree","True"],
- ["showSequenceLogo","true"],
- ["showGroupConsensus","true"],
- ["showFullId","false"],
- ["linkLabel_1","Uniprot"],
- ["linkUrl_1","http://www.uniprot.org/uniprot/$SEQUENCE_ID$"],
- ["linkLabel_2","EMBL-EBI Search"],
- ["linkUrl_2","http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"],
- ["APPLICATION_URL","http://www.jalview.org/services/launchApp"]];
- var app = createAppletTag('jalview.bin.JalviewLite','',appletJars,'140','35', params);
- console.log('—————————> app ———————> ' + app);
- //var appDiv = document.getElementById("applet_div");
- //var appDiv = document.getElementById("applet_div");
- //appDiv.appendChild(app);
- $("<div class='newbox'>I'm new box by appendTo</div>").appendTo('.applet_div');
- //$(‘.applet_div').append(app);
- });
function doSubmit(target){
- //setOrUpdateCookie('current_page', target, '1');
- //alert('current page : ' + readCookie("current_page"));
var currentPage = target+'.html';
- $('#content').load(currentPage);
+ //alert("page:" + target);
+ if(target == "embeddedWJmol"){
+ //loadJMolPage();
+ window.location.href = 'embeddedWJmol.html#' + target;
+ $('#content').load(currentPage);
+ }else{
+ window.location.href = 'index.html#' + target;
+ $('#content').load(currentPage);
+ }
updateLinks(target);
}
+
+
function updateLinks(target) {
var ul = document.getElementById("menu");
var items = ul.getElementsByTagName("li");
ele.className=ele.className.replace(reg,' ');
}
}
+