-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
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<TITLE>Linked JalviewLites</TITLE>
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+<!-- dd menu -->
+<script type="text/javascript">
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+// open hidden layer
+function mopen(id)
+{
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- // close old layer
- if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
+ // close old layer
+ if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
- // get new layer and show it
- ddmenuitem = document.getElementById(id);
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+ // get new layer and show it
+ ddmenuitem = document.getElementById(id);
+ ddmenuitem.style.visibility = 'visible';
- }
- // close showed layer
- function mclose()
- {
- if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
- }
+}
+// close showed layer
+function mclose()
+{
+ if(ddmenuitem) ddmenuitem.style.visibility = 'hidden';
+}
- // go close timer
- function mclosetime()
- {
- closetimer = window.setTimeout(mclose, timeout);
- }
+// go close timer
+function mclosetime()
+{
+ closetimer = window.setTimeout(mclose, timeout);
+}
- // cancel close timer
- function mcancelclosetime()
- {
- if(closetimer)
- {
- window.clearTimeout(closetimer);
- closetimer = null;
- }
- }
+// cancel close timer
+function mcancelclosetime()
+{
+ if(closetimer)
+ {
+ window.clearTimeout(closetimer);
+ closetimer = null;
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+}
- // close layer when click-out
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- // -->
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<script>
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<body>
- <div id="header">
- <div id="logo"><a href="http://www.jalview.org" title="Home"></a></div>
- <ul id="buttons">
- <li id="applet"><a href="applets.html" title="applet"></a></li>
- <li id="desktop"><a href="../webstart/jalview.jnlp" title="desktop"></a></li>
- </ul>
- </div>
+<div id="header">
+<div id="logo"><a href="http://www.jalview.org" title="Home"></a></div>
+<ul id="buttons">
+<li id="applet"><a href="applets.html" title="applet"></a></li>
+<li id="desktop"><a href="../webstart/jalview.jnlp" title="desktop"></a></li>
+</ul>
+</div>
-
- <div id ="nav">
- <div id="navInner">
- <ul id="sddm">
- <li><a href="http://www.jalview.org">Home</a></li>
- <li><a href="http://www.jalview.org/about" onmouseover="mopen('m1')" onmouseout="mclosetime()">About</a>
- <div id="m1" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
- <a href="http://www.jalview.org/about/documentation">Documentation</a>
- <a href="http://www.jalview.org/about/citation">Publications</a>
- <a href="http://www.jalview.org/about/credits">Credits</a>
- </div>
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- <li><a href="http://www.jalview.org/faq">FAQ</a></li>
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- <div id="m3" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
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- <a href="http://www.jalview.org/community/links">Links</a>
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- <div id="m5" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
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- <a href="http://www.jalview.org/training/training-news">Training News</a>
- </div>
- </li>
- <li><a href="http://www.jalview.org/download" class="download-right">Download</a></li>
- </ul>
- <div style="clear:both"></div>
- </div>
+<div id ="nav">
+<div id="navInner">
+<ul id="sddm">
+ <li><a href="http://www.jalview.org">Home</a></li>
+ <li><a href="http://www.jalview.org/about" onmouseover="mopen('m1')" onmouseout="mclosetime()">About</a>
+ <div id="m1" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
+ <a href="http://www.jalview.org/about/documentation">Documentation</a>
+ <a href="http://www.jalview.org/about/citation">Publications</a>
+ <a href="http://www.jalview.org/about/credits">Credits</a>
+ </div>
+ </li>
+ <li><a href="http://www.jalview.org/faq">FAQ</a></li>
+ <li><a href="http://www.jalview.org/community" onmouseover="mopen('m3')" onmouseout="mclosetime()" class="community">Community</a>
+ <div id="m3" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
+ <a href="http://www.jalview.org/mailman/listinfo/jalview-announce">News Mailing List</a>
+ <a href="http://www.jalview.org/mailman/listinfo/jalview-discuss">Discussion Mailing List</a>
+ <a href="http://www.jalview.org/community/links">Links</a>
+ <a href="http://www.jalview.org/community/community-news">Community News</a>
</div>
+ </li>
+ <li><a href="http://www.jalview.org/development" onmouseover="mopen('m4')" onmouseout="mclosetime()" class="development">Development</a>
+ <div id="m4" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
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+ <a href="http://www.jalview.org/development/development-news">Development News</a>
+ </div>
+ </li>
+ <li><a href="http://www.jalview.org/training" onmouseover="mopen('m5')" onmouseout="mclosetime()" class="training">Training</a>
+ <div id="m5" onmouseover="mcancelclosetime()" onmouseout="mclosetime()">
+ <a href="http://www.jalview.org/training/training-courses">Training Courses</a>
+ <a href="http://www.jalview.org/training/training-news">Training News</a>
+ </div>
+ </li>
+ <li><a href="http://www.jalview.org/download" class="download-right">Download</a></li>
+</ul>
+<div style="clear:both"></div>
+</div>
+
+</div>
+
+
<div id="pageWrap">
<div id="sideNav">
- <ul>
- <li ><a href="applets.html">JalviewLite Examples</a></li>
+<ul>
+<li><a href="applets.html">JalviewLite Examples</a></li>
<li ><a href="jalviewLiteJs.html">Javascript API</a></li>
- <li ><a href="appletParameters.html">Applet Parameters</a></li>
+<li><a href="appletParameters.html">Applet Parameters</a></li>
<li ><a href="embedded.html">Embedded Alignment</a></li>
<li ><a href="embeddedWJmol.html">Jalview and Jmol</a></li>
<li ><a href="formComplete.html">Access from Javascript</a></li>
<li ><a href="javascriptLaunch.html">Javascript Launch</a></li>
<li class="jvlite-nav-small"><a href="linkedapplets_ng.html">Linked JalviewLites</a></li>
- </ul>
+</ul>
</div>
-<div id="content" class="content">
+<div id="content" class="content">
<!-- boiler plate link to alternate demopage -->
</div>
<!-- content template start -->
-<script src="http://www.java.com/js/deployJava.js"></script>
+<script src="javascript/deployJava.js"></script>
+<script src="javascript/jshashtable-2.1.js" language="javascript"></script>
<script src="javascript/jalview.js" language="javascript"></script>
<script> //deployJava.debug="true";
<script>
var attributes = {
code : 'jalview.bin.JalviewLite',
- archive : 'jalviewApplet.jar',
+ archive : 'jalviewApplet.jar,JmolApplet-12.2.4.jar',
width : 800,
height : 300,
mayscript : 'True', scriptable: 'True',
<script>
var attributes = {
code : 'jalview.bin.JalviewLite',
- archive : 'jalviewApplet.jar',
+ archive : 'jalviewApplet.jar,JmolApplet-12.2.4.jar',
width : 800,
height : 300,
mayscript : 'True', scriptable: 'True',
linkLabel_1 : "EMBL-EBI Search",
linkUrl_1 : "http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"
,
- linkLabel_2 : "Uniprot"
- ,
+ linkLabel_2 : "Uniprot",
linkUrl_2 : "http://www.uniprot.org/uniprot/$SEQUENCE_ID$",
permissions : 'sandbox',
APPLICATION_URL : "http://www.jalview.org/services/launchApp"