contig_1146 exonerate:protein2genome:local gene 8534 11269 3652 - . gene_id 0 ; sequence DDB_G0269124 ; gene_orientation .
contig_1146 exonerate:protein2genome:local cds 8534 11269 . - .
contig_1146 exonerate:protein2genome:local exon 8534 11269 . - . insertions 3 ; deletions 6
+#TODO need to understand why GFF features is from 11269 but Align is from 11270
contig_1146 exonerate:protein2genome:local similarity 8534 11269 3652 - . alignment_id 0 ; Query DDB_G0269124 ; Align 11270 143 120 ; Align 11150 187 282 ; Align 10865 281 888 ; Align 9977 578 1068 ; Align 8909 935 375
# and a made-up alignment to a sequence in exonerateseqs.fa
contig_1146 exonerate:protein2genome:local similarity 8534 11269 3652 - . alignment_id 0 ; Query DDB_G0280897 ; Align 11270 143 120