public final class AptxConstants {
- final static boolean __ALLOW_PHYLOGENETIC_INFERENCE = true;
- public final static boolean __RELEASE = false; // TODO remove me
- public final static boolean __SNAPSHOT_RELEASE = false; // TODO remove me
+ final static boolean __ALLOW_PHYLOGENETIC_INFERENCE = true;
public final static String PRG_NAME = "Archaeopteryx";
- final static String VERSION = "0.9912 beta";
- final static String PRG_DATE = "160631";
+ final static String VERSION = "0.9921 beta";
+ final static String PRG_DATE = "170712";
final static String DEFAULT_CONFIGURATION_FILE_NAME = "_aptx_configuration_file";
final static String[] DEFAULT_FONT_CHOICES = {
"Arial Unicode MS", "Dialog", "SansSerif", "Sans", "Arial", "Helvetica" };
static final int MAX_TREES_TO_LOAD = 100;
final static float PDF_LINE_WIDTH_DEFAULT = 0.5f;
final static String APTX_WEB_SITE = "https://sites.google.com/site/cmzmasek/home/software/archaeopteryx";
+ final static String APTX_JS_WEB_SITE = "https://sites.google.com/site/cmzmasek/home/software/archaeopteryx-js";
+ final static String APTX_MAILING_LIST = "https://groups.google.com/forum/?fromgroups#!forum/archaeopteryx";
final static String APTX_DOC_SITE = "https://sites.google.com/site/cmzmasek/home/software/archaeopteryx/documentation";
final static String PHYLOXML_WEB_SITE = ForesterConstants.PHYLO_XML_LOCATION;
final static String PHYLOXML_REFERENCE_URL = "http://www.biomedcentral.com/1471-2105/10/356/";
final static short NUMBER_OF_DIGITS_AFTER_COMMA_FOR_BRANCH_LENGTH_VALUES_DEFAULT = 3;
final static short NUMBER_OF_DIGITS_AFTER_COMMA_FOR_CONFIDENCE_VALUES_DEFAULT = 2;
public static final boolean NH_PARSING_IGNORE_QUOTES_DEFAULT = false;
- static final CLADOGRAM_TYPE CLADOGRAM_TYPE_DEFAULT = CLADOGRAM_TYPE.EXT_NODE_SUM_DEP;
+ static final CLADOGRAM_TYPE CLADOGRAM_TYPE_DEFAULT = CLADOGRAM_TYPE.LINED_UP;
final static boolean VALIDATE_AGAINST_PHYLOXML_XSD_SCJEMA_DEFAULT = true;
final static String BACKUP_FILE_SUFFIX = ".BAK";
final static double MIN_NOT_COLLAPSE_DEFAULT = 50;
public final static Color DOMAIN_BASE_COLOR_FOR_PDF = new Color( 100,
100,
100 );
- public final static Color DOMAIN_LABEL_COLOR_FOR_PDF = new Color( 150,
- 150,
- 150 );
- final static short DEFAULT_NODE_SHAPE_SIZE_DEFAULT = 4;
+ public final static Color DOMAIN_LABEL_COLOR_FOR_PDF = new Color( 0,
+ 0,
+ 0 );
+ final static short DEFAULT_NODE_SHAPE_SIZE_DEFAULT = 7;
+ static final int MAX_LENGTH_FOR_COLLAPSED_NAME = 8;
}