public final class AptxConstants {
final static boolean __ALLOW_PHYLOGENETIC_INFERENCE = true;
- public final static boolean __RELEASE = false; // TODO remove me
- public final static boolean __SNAPSHOT_RELEASE = false; // TODO remove me
- public final static boolean __SYNTH_LF = false; // TODO remove me
public final static String PRG_NAME = "Archaeopteryx";
- final static String VERSION = "0.9909 experimental";
- final static String PRG_DATE = "160622";
+ final static String VERSION = "0.9914 beta";
+ final static String PRG_DATE = "160712";
final static String DEFAULT_CONFIGURATION_FILE_NAME = "_aptx_configuration_file";
final static String[] DEFAULT_FONT_CHOICES = {
- "SansSerif", "Sans-serif", "Sans", "Dialog", "Lucida Sans", "Tahoma", "Helvetica", "Arial", "Verdana" };
+ "Arial Unicode MS", "Dialog", "SansSerif", "Sans", "Arial", "Helvetica" };
final static boolean VERBOSE_DEFAULT = false;
final static int DOMAIN_STRUCTURE_DEFAULT_WIDTH = 100;
final static String AUTHOR_EMAIL = "phyloxml@gmail.com";
static final boolean SPECIAL_CUSTOM = false; //TODO remove me
static final double EXT_NODE_INFO_LENGTH_MAX_RATIO = 0.95;
static final Dimension NODE_PANEL_SPLIT_MINIMUM_SIZE = new Dimension( 100, 50 );
- static final Dimension NODE_PANEL_SIZE = new Dimension( 500, 600 );
+ static final Dimension NODE_PANEL_SIZE = new Dimension( 500, 540 );
static final Dimension NODE_FRAME_SIZE = new Dimension( 520, 640 );
static final String APPLET_PARAM_NAME_FOR_URL_OF_TREE_TO_LOAD = "url_of_tree_to_load";
static final String APPLET_PARAM_NAME_FOR_URL_OF_SPECIES_TREE_TO_LOAD = "url_of_species_tree_to_load";
static final String APPLET_PARAM_NAME_FOR_DEFAULT_QUERY_SEQUENCE = "homology_type_analysis_query_sequence";
static final String APPLET_PARAM_NAME_FOR_DEFAULT_SEQUENCE_RELATION_TYPE = "homology_type_analysis_initial_relation_type";
static final int MAX_TREES_TO_LOAD = 100;
- static final int US_LETTER_SIZE_X = 612;
- static final int US_LETTER_SIZE_Y = 792;
- static final int A4_SIZE_X = 595;
- static final int A4_SIZE_Y = 845;
final static float PDF_LINE_WIDTH_DEFAULT = 0.5f;
final static String APTX_WEB_SITE = "https://sites.google.com/site/cmzmasek/home/software/archaeopteryx";
final static String APTX_DOC_SITE = "https://sites.google.com/site/cmzmasek/home/software/archaeopteryx/documentation";