-mvn clean package -Dgetdown.host.whitelist=jalview.org,*.jalview.org && cp launcher/target/getdown-launcher-1.8.3-SNAPSHOT.jar ../../../getdown/lib/getdown-launcher.jar && cp core/target/getdown-core-1.8.3-SNAPSHOT.jar ../../../getdown/lib/getdown-core-1.8.3-SNAPSHOT.jar && cp core/target/getdown-core-1.8.3-SNAPSHOT.jar ../../../j8lib/getdown-core.jar && cp core/target/getdown-core-1.8.3-SNAPSHOT.jar ../../../j11lib/getdown-core.jar
+#!/usr/bin/env bash
+
+if [ x$JVLVERSION != x ]; then
+ export VERSION=$JVLVERSION
+else
+ export VERSION=1.8.3-1.5.3_JVL
+fi
+
+if [ x${VERSION%_JVL} = x$VERSION ]; then
+ VERSION=${VERSION}_JVL
+fi
+
+echo "Setting VERSION to '$VERSION'"
+perl -p -i -e 's|(<version>)[^<]*JVL[^<]*(</version>)|${1}$ENV{VERSION}${2}|;' pom.xml */pom.xml
+
+echo "Making sure jalview classes are up-to-date"
+for x in $(find core/src/main/java/jalview launcher/src/main/java/jalview -name "*.java")
+do
+ y=${x##*java/}
+ if [ -e "../../../src/${y}" ]; then
+ echo /bin/cp "../../../src/${y}" "${x}"
+ /bin/cp "../../../src/${y}" "${x}"
+ else
+ echo "'../../../src/${y}' doesn't exist, not copying"
+ fi
+done
+mvn package -Dgetdown.host.whitelist="jalview.org,*.jalview.org" -Dallow_file_protocol=false -Dconnect_timeout=8 -Dread_timeout=15
+RET=$?
+if [ x$RET = x0 ]; then
+ cp launcher/target/getdown-launcher-$VERSION.jar ../../../getdown/lib/getdown-launcher.jar && echo "Copied getdown-launcher-$VERSION.jar to getdown/lib"
+ cp core/target/getdown-core-$VERSION.jar ../../../getdown/lib/getdown-core.jar && echo "Copied getdown-core-$VERSION.jar to getdown/lib"
+ cp core/target/getdown-core-$VERSION.jar ../../../j8lib/getdown-core.jar && echo "Copied getdown-core-$VERSION.jar to j8lib"
+ cp core/target/getdown-core-$VERSION.jar ../../../j11lib/getdown-core.jar && echo "Copied getdown-core-$VERSION.jar to j11lib"
+ echo "$VERSION" > ../../../getdown/lib/JVL_VERSION
+fi
+
+VERSION=${VERSION/JVL/FJVL}
+echo "Setting VERSION to '$VERSION'"
+perl -p -i -e 's|(<version>)[^<]*JVL[^<]*(</version>)|${1}$ENV{VERSION}${2}|;' pom.xml */pom.xml
+mvn package -Dgetdown.host.whitelist="jalview.org,*.jalview.org" -Dallow_file_protocol=true -Dconnect_timeout=4 -Dread_timeout=4
+RET=$?
+if [ x$RET = x0 ]; then
+ cp launcher/target/getdown-launcher-$VERSION.jar ../../../getdown/lib/getdown-launcher-local.jar && echo "Copied getdown-launcher-$VERSION.jar to getdown/lib/getdown-launcher-local.jar"
+ echo "$VERSION" > ../../../getdown/lib/FJVL_VERSION
+fi