#JAVA_VERSION = 1.8
JAVA_VERSION = 11
+
+source_dir = src
+#source_dir = utils/jalviewjs/test/src
+
+test_source_dir = test
+#test_source_dir = utils/jalviewjs/test/test
+
JALVIEW_VERSION = DEVELOPMENT
INSTALLATION = Source
jalview_keystore = keys/.keystore
j8libDir = j8lib
j11libDir = j11lib
-resourceDir = resources
-helpParentDir = help
-helpDir = help
-helpOutputDir = build/distributions/help
+resource_dir = resources
+help_parent_dir = help
+help_dir = help
docDir = doc
-sourceDir = src
schemaDir = schemas
-classesDir = classes
+classes_dir = classes
examplesDir = examples
clover = false
use_clover = false
ARCHIVEDIR =
outputJar = jalview.jar
-testSourceDir = test
testOutputDir = tests
utilsDir = utils
-buildPropertiesFile = .build_properties
+build_properties_file = .build_properties
application_codebase = *.jalview.org
mainClass = jalview.bin.Jalview
shadowJarMainClass = jalview.bin.Launcher
getdown_txt_title = Jalview
getdown_txt_allow_offline = true
getdown_txt_max_concurrent_downloads = 10
-# now got better defaults when not set
-#getdown_txt_jalview.jvmmempc = 90
-# now got better defaults when not set
-#getdown_txt_jalview.jvmmemmax = 32G
+getdown_txt_jalview.jvmmempc = 90
getdown_txt_multi_jvmarg = -Dgetdownappdir=%APPDIR%
getdown_txt_strict_comments = true
getdown_txt_title = Jalview
OSX_KEYPASS =
JSIGN_SH = echo
-eclipse_extra_jdt_prefs_file = .settings/org.eclipse.jdt.core.jalview.prefs
-
pandoc_exec = /usr/local/bin/pandoc,/usr/bin/pandoc
dev = false
bamboo_channelbase = https://builds.jalview.org/browse
bamboo_planKey =
bamboo_getdown_channel_suffix = /latest/artifact/shared/getdown-channel
-
+
+eclipse_codestyle_file = utils/eclipse/JalviewCodeStyle.xml
+eclipse_extra_jdt_prefs_file = utils/eclipse/org.eclipse.jdt.core.jalview.prefs
+eclipse_project_name = jalview
+eclipse_bin_dir = bin
+eclipse_debug = false
+
+# Override this in a local.properties file
+jalviewjs_eclipse_root = ~/buildtools/eclipse/jee-2019-09
+
+jalviewjs_eclipse_dropins_dir = utils/jalviewjs/eclipse/dropins
+jalviewjs_swingjs_zip = swingjs/SwingJS-site.zip
+jalviewjs_j2s_plugin = swingjs/net.sf.j2s.core.jar
+jalviewjs_j2s_plugin_j11 = swingjs/net.sf.j2s.core-j11.jar
+jalviewjs_libjs_dir = utils/jalviewjs/libjs
+jalviewjs_site_resource_dir = utils/jalviewjs/site-resources
+jalviewjs_classlists_dir = utils/jalviewjs/classlists
+jalviewjs_classlist_jalview = utils/jalviewjs/_j2sclasslist.txt
+jalviewjs_j2s_settings = .j2s
+#jalviewjs_eclipse_workspace = ~/tmp/eclipse-workspace
+# these 3 files/dirs found in build/jalviewjs
+jalviewjs_eclipse_tmp_dropins_dir = eclipse_dropins
+jalviewjs_eclipse_workspace_location_file = eclipse_workspace_location
+jalviewjs_site_dir = site
+# these dirs are subdirs of the site dir
+jalviewjs_swingjs_subdir = swingjs
+jalviewjs_j2s_subdir = swingjs/j2s
+jalviewjs_js_subdir = swingjs/js
+#jalviewjs_eclipseBuildArg = build
+jalviewjs_eclipse_build_arg = cleanBuild
+jalviewjs_server_port = 9001
+jalviewjs_server_wait = 30
+jalviewjs_server_resource = /jalview_bin_Jalview.html
+jalviewjs_core_name = _jalview
+jalviewjs_name = JalviewJS
+jalviewjs_core_key = core
+#jalviewjs_core_key = preloadCore
+jalviewjs_ignore_transpile_errors = true
+
+j2s.compiler.status = enable
+j2s.compiler.java.version = 11
+#j2s.site.directory = null ## site defined from buildDir+'/jalviewjs/'+jalviewjs_site_dir
+#j2s.log.methods.declared = j2s_methods_declared.log
+#j2s.log.methods.called = j2s_methods_called.log
+#a semicolon-separated list of package-level file paths to be excluded
+j2s.excluded.paths = test;testng;util
+#j2s.include.tests = true
+#j2s.testing = null
+#j2s.compiler.nonqualified.packages = null
+#j2s.compiler.nonqualified.classes = null
+#j2s.compiler.mode = debug
+#a semicolon-separated list of package (foo.) or class (foo.bar) replacements to be made
+j2s.class.replacements = org.apache.log4j.->jalview.javascript.log4j.
+j2s.template.html = utils/jalviewjs/template.html
+j2s_coretemplate_html = utils/jalviewjs/coretemplate.html
+#output file name for logging methods declared - delete the file to regenerate a listing
+#j2s.prop.j2s.log.methods.declared=swingjs/methodsDeclared_csv
+#output file name for logging methods called - delete the file to regenerate a listing
+#j2s.prop.j2s.log.methods_called=swingjs/methodsCalled_csv
+#if set, every instance of methods called will be logged
+#otherwise, only the first call to a method will be logged
+#output will be comma-separated: called method,caller class
+#j2s.prop.j2s.log.all.calls=true
+
+jalviewjs_j2s_transpile_stdout = j2s-transpile.out
+#jalviewjs_j2s_stderr = j2s-transpile.err # all going into out
+jalviewjs_j2s_to_console = true
+jalviewjs_j2s_closure_stdout = j2s-closure.out
+
+
+testp=gradle.properties