<tocitem text="Pairwise Alignments" target="pairwise"/>
<tocitem text="Remove Redundancy" target="redundancy"/>
</tocitem>
+ <tocitem text="Sequence Annotations" target="seqannots" expand="true">
+ <tocitem text="Annotation from Structure" target="xsspannotation" expand="false"/>
+ </tocitem>
<tocitem text="Alignment Annotations" target ="alannotation" expand="false">
<tocitem text="Conservation" target="calcs.alconserv"/>
<tocitem text="Quality" target="calcs.alquality"/>
</tocitem>
<tocitem text="Viewing PDB Files" target="viewingpdbs" expand="false">
<tocitem text="Jmol Viewer" target="pdbjmol"/>
+ <tocitem text="Chimera Viewer" target="chimera"/>
<tocitem text="Simple PDB Viewer" target="pdbmcviewer"/>
</tocitem>
<tocitem text="Viewing RNA structures" target="varna" expand="false"> </tocitem>
<tocitem text="Window Menus" target="menus" expand="false">
<tocitem text="Desktop Window" target="desktopMenu"/>
<tocitem text="Alignment Window" target="alMenu">
- <tocitem text="File Menu" target="alwFile"/>
- <tocitem text="Edit Menu" target="alwEdit"/>
- <tocitem text="Select Menu" target="alwSelect"/>
- <tocitem text="View Menu" target="alwView"/>
- <tocitem text="Format Menu" target="alwFormat"/>
- <tocitem text="Colour Menu" target="alwColour"/>
- <tocitem text="Calculation Menu" target="alwCalc"/>
- <tocitem text="Web Service Menu" target="wsMenu"/>
- <tocitem text="Annotation Menus" target="annotMenus"/>
- <tocitem text="Popup Menu" target="popMenu"/>
- </tocitem>
+ <tocitem text="File Menu" target="alwFile"/>
+ <tocitem text="Edit Menu" target="alwEdit"/>
+ <tocitem text="Select Menu" target="alwSelect"/>
+ <tocitem text="View Menu" target="alwView"/>
+ <tocitem text="Annotations Menu" target="alwAnnotations"/>
+ <tocitem text="Format Menu" target="alwFormat"/>
+ <tocitem text="Colour Menu" target="alwColour"/>
+ <tocitem text="Calculation Menu" target="alwCalc"/>
+ <tocitem text="Web Service Menu" target="wsMenu"/>
+ <tocitem text="Annotation Panel Menu" target="annotPanelMenu"/>
+ <tocitem text="Popup Menu" target="popMenu"/>
+ </tocitem>
</tocitem>
<tocitem text="Preferences" target="preferences"/>
<tocitem text="Memory Settings" target="memory" expand="false">