<tocitem text="Jalview Documentation" target="home" expand="true">
<tocitem text="What's new" target="new" expand="true">
<tocitem text="Latest Release Notes" target="release"/>
- <tocitem text="Groovy Features Counter example" target="groovy.featurescounter"/>
- <tocitem text="Omit hidden regions in Overview" target="overview"/>
- <tocitem text="Split Frame View" target="splitframe.mirrorfonts" />
</tocitem>
<tocitem text="Editing Alignments" target="edit" />
<tocitem text="Calculations" expand="false">
<tocitem text="Sorting alignments" target="sorting" />
- <tocitem text="Calculating trees" target="trees" />
- <tocitem text="Principal Component Analysis" target="pca" />
+ <tocitem text="Trees and PCA" target="calcs.dialog" expand="false">
+ <tocitem text="Calculating trees" target="trees" />
+ <tocitem text="Principal Component Analysis" target="pca" />
+ </tocitem>
<tocitem text="Tree/PCA Input Data" target="recoverInputdata" />
<tocitem text="Pairwise Alignments" target="pairwise" />
<tocitem text="Remove Redundancy" target="redundancy" />
</tocitem>
<tocitem text="Viewing RNA structures" target="varna" expand="false"/>
<tocitem text="Opening URLs from Jalview" target="urllinks" expand="true">
- <tocitem text="Configuring URL Links" target="linkspref" />
+ <tocitem text="Configuring URL Links" target="linksprefs" />
</tocitem>
<tocitem text="VAMSAS Data Exchange" target="vamsas">
<!-- what can Jalview share with other apps -->