<?xml version="1.0" encoding="ISO-8859-1" ?>
<!--
- Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.0.b2)
- Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-
- This program is free software; you can redistribute it and/or
- modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
- of the License, or (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program; if not, write to the Free Software
- Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
-->
<!DOCTYPE toc PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp TOC Version 1.0//EN" "http://java.sun.com/products/javahelp/toc_1_0.dtd">
<toc version="1.0">
<tocitem text="Jalview Documentation" target="home" expand="true" >
<tocitem text="What's new" target="new" expand="true">
+ <tocitem text="Jaba Web Services" target="jabaws"/>
+ <tocitem text="Superpositions with Jmol 12" target="pdbjmol"/>
+ <tocitem text="Web Service Parameters" target="wsparams"/>
+ <tocitem text="Web Service Preferences" target="wsprefs"/>
<tocitem text="Release History" target="release"/>
- <tocitem text="Sequence Retrieval" target="seqfetch"/>
- <tocitem text="VAMSAS Interoperation" target="vamsas"/>
</tocitem>
<tocitem text="Editing Alignments" target ="edit"/>
<tocitem text="Cursor Mode" target="cursor"/>
<tocitem text="DAS Feature Settings" target="das.settings"/>
</tocitem>
<tocitem text="Web Services" target="webservice" expand="false">
+ <tocitem text="JABAWS" target="jabaws"/>
+ <tocitem text="Web Service Preferences" target="wsprefs"/>
+ <tocitem text="Web Service Parameters" target="wsparams"/>
<tocitem text="Sequence Alignment" target="msaservice" expand="false">
<tocitem text="Clustal Alignment" target="clustal"/>
<tocitem text="Muscle Alignment" target="muscle"/>
</tocitem>
<tocitem text="Secondary Structure Prediction" target="jnet"/>
<tocitem text="Sequence Retrieval" target="seqfetch"/>
+ <tocitem text="Database Reference Retrieval" target="dbreffetcher"/>
<tocitem text="DAS Feature Retrieval" target="das.viewing"/>
</tocitem>
<tocitem text="Colour Schemes" target="colours" expand="false">