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<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
<strong>User Defined Colours</strong>
</p>
<p>
- <img src="userDefined_java6.gif" width="815" height="402">
+ <img src="userDefined_java7.gif" width="815" height="402">
</p>
<p>
You may define any number of new colour schemes, each with a unique
The <strong>Case Sensitive</strong> option allows you to choose
distinct colours for upper and lower case residue codes.
<p>
+ The <strong>Colour All Lower Case </strong> option allows you to apply a selected colour
+ to all lower case residues.
+ <p>
Click <strong>Apply</strong> or <strong>OK</strong> to set your new
colours on the active alignment window.<br /> Click <strong>Cancel</strong>
to undo your changes if you pressed the <strong>Apply</strong>
<br> Any saved colour schemes will be automatically loaded the
next time you use Jalview.
<br>
- <br>
- <em>Note: the screenshot shows the appearance when running Java
- version 6. For Java 7 (from Jalview 2.8.2) only the Swatches colour
- chooser is currently supported (for reasons of available screen
- space).</em>
- <p />
</body>
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