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- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
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-<head><title>User Defined Colours</title></head>
+<head>
+<title>User Defined Colours</title>
+</head>
<body>
-<p><em>User Defined Colours</em></p>
-<p><img src="userDefined_java6.gif" width="719" height="368"> </p>
-<p>You may define any number of new colour schemes, each with a unique name. <br>
- <br>
- Each of the residues in a colour scheme may be assigned any chosen colour. <br>
- Select one or more residues, then select the desired colour.<br/>
- Use Ctrl-click to select multiple residues, or click then Shift-click to select a block.<br/>
- Note that the currently selected buttons are highlighted by a lighter text colour.
<p>
- The 'Case Sensitive' option allows you to choose distinct colours for upper and
- lower case residue codes.
+ <strong>User Defined Colours</strong>
+ </p>
+ <p>
+ <img src="userDefined_java7.gif" width="815" height="402">
+ </p>
+ <p>
+ You may define any number of new colour schemes, each with a unique
+ name. <br> <br> Each of the residues in a colour scheme
+ may be assigned any chosen colour. <br> Select one or more
+ residues, then select the desired colour.<br /> Use Ctrl-click to
+ select multiple residues, or click then Shift-click to select a
+ block.<br /> Note that the currently selected buttons are
+ highlighted by a lighter text colour.
+ <p>
+ The <strong>Case Sensitive</strong> option allows you to choose
+ distinct colours for upper and lower case residue codes.
<p>
- Click "Apply" or "OK" to set your new colours on the active
- alignment window.<br/>
- Click "Cancel" to undo your changes if you pressed the "Apply"
- button.
+ The <strong>Colour All Lower Case </strong> option allows you to apply a selected colour
+ to all lower case residues.
+ <p>
+ Click <strong>Apply</strong> or <strong>OK</strong> to set your new
+ colours on the active alignment window.<br /> Click <strong>Cancel</strong>
+ to undo your changes if you pressed the <strong>Apply</strong>
+ button.
</p>
- If you save your colour scheme with a unique name, the colour scheme name will
- be added to the "Colour" menu on each new alignment window.<br>
+ If you save your colour scheme with a unique name, the colour scheme
+ name will be added to the
+ <strong>Colour</strong> menu on each new alignment window.
+ <br>
+ <br> Any saved colour schemes will be automatically loaded the
+ next time you use Jalview.
<br>
- Any saved colour schemes will be automatically loaded the next time you use
- Jalview.</p>
- Note: the screenshot shows the appearance when running Java version 6. For Java 7, only the Swatches colour chooser is
- currently supported (for reasons of available screen space).
- <p/>
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