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<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
<p>
<strong>DAS Sequence Feature Retrieval</strong>
</p>
- <p>
- Jalview includes a client for retrieving sequences and their
- features via the <a href="http://www.biodas.org">Distributed
- Annotation System</a>.
- </p>
+ <p>Jalview includes a client for retrieving sequences and their
+ features via the Distributed Annotation System.</p>
<ol>
<li>Open the Feature Settings panel by selecting "View
-> Feature Settings..."</li>
</li>
</ol>
<p>
- If your DAS source selection contains sources which use Uniprot
- accession ids, you will be asked whether Jalview should find Uniprot
+ If your DAS source selection contains sources which use UniProt
+ accession ids, you will be asked whether Jalview should find UniProt
Accession ids for the given sequence names. It is important to
- realise that many DAS sources only use Uniprot accession ids, rather
- than Swissprot/Uniprot sequence names.<br> The <a
- href="../webServices/dbreffetcher.html"
- >database reference fetcher</a> documentation describes how Jalview
- discovers what database references are appropriate for the sequences
- in the alignment.
+ realise that many DAS sources only use UniProt accession ids, rather
+ than Swissprot/UniProt sequence names.<br> The <a
+ href="../webServices/dbreffetcher.html">database
+ reference fetcher</a> documentation describes how Jalview discovers
+ what database references are appropriate for the sequences in the
+ alignment.
<ul>
<li><em>Note</em><br> Please remember to save your
alignment if either the start/end numbering, or the sequence IDs
<p>
<em>DAS support was introduced in Jalview Version 2.1.</em>
</p>
+ <br />
+ <p>
+ <em>The DAS registry at http://www.dasregistry.org was
+ decommissioned early in 2015. An unmaintained mirror is currently
+ hosted at http://www.ebi.ac.uk/das-srv/registry/.</em>
+ </p>
<p>
</body>
</html>