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updated helpTOC to include recently added features, updated menus and outdated screen...
[jalview.git] / help / html / menus / alignmentMenu.html
diff --git a/help/html/menus/alignmentMenu.html b/help/html/menus/alignmentMenu.html
index 966c005..5bf9e60 100755 (executable)
--- a/help/html/menus/alignmentMenu.html
+++ b/help/html/menus/alignmentMenu.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -72,6 +72,7 @@
                                                <li><strong>AMSA</strong></li>
                                                <li><strong>STH</strong></li>
                                                <li><strong>Phylip</strong></li>
+                                               <li><strong>JSON</strong></li>
                                        </ul></li>
                                <li><strong>Print (Control P)<br> </strong><em>Jalview
                                                will print the alignment using the current fonts and colours of
@@ -244,7 +245,7 @@
                                                selected groups of the alignment will be subdivided according to
                                                the contents of the currently selected region. <br />Use this to
                                                subdivide an alignment based on the different combinations of
-                                               residues observed at specific positions. (new in jalview 2.5)</em>
+                                               residues observed at specific positions. (new in Jalview 2.5)</em>
                                </li>
        <li><strong>Undefine Groups (Control U)<br> </strong><em>The
             alignment will be reset with no defined groups.<br> <strong>WARNING</strong>: