on compute facilities at the University of Dundee. You need a continuous network \r
connection in order to use these services through Jalview. </em> </p>\r
<ul>\r
- <li><strong>Alignment </strong> \r
+ <li><strong>Alignment</strong> \r
<ul>\r
<li><strong>ClustalW Multiple Sequence Alignment</strong><br>\r
<em> Submits all, or just the currently selected sequences for alignment \r
<em> Submits the alignment or currently selected region for re-alignment \r
with clustal W. Use this if you have added some new sequences to an existing \r
alignment.</em></li>\r
+ <li><strong>MAFFT Multiple Sequence Alignment</strong><br>\r
+ <em>Submits all, or just the currently selected region for alignment with \r
+ MAFFT. </em> </li>\r
<li><strong>Muscle Multiple Protein Sequence Alignment</strong><br>\r
- <em> Submits all, or jut the currently selected sequences for alignment \r
+ <em> Submits all, or just the currently selected sequences for alignment \r
using Muscle. Do not use this if you are working with nucleic acid sequences.</em></li>\r
</ul>\r
</li>\r
detection and prediction. </em></li>\r
<li><em>If a set of sequences are selected, and they appear to be aligned, \r
then the alignment will be used for a Jnet prediction on the <strong>first</strong> \r
- sequence selected in the set (that is, the one that was first clicked \r
- on). </em> </li>\r
+ sequence in the set (that is, the one that appears first in the alignment \r
+ window). </em> </li>\r
</ul>\r
</li>\r
</ul>\r